[HTML][HTML] Theoretical analysis of epigenetic cell memory by nucleosome modification

IB Dodd, MA Micheelsen, K Sneppen, G Thon - Cell, 2007 - cell.com
Chromosomal regions can adopt stable and heritable alternative states resulting in bistable
gene expression without changes to the DNA sequence. Such epigenetic control is often …

[HTML][HTML] Cellular memory and the histone code

BM Turner - Cell, 2002 - cell.com
The histone tails on the nucleosome surface are subject to enzyme-catalyzed modifications
that may, singly or in combination, form a code specifying patterns of gene expression …

Nucleosome destabilization in the epigenetic regulation of gene expression

S Henikoff - Nature Reviews Genetics, 2008 - nature.com
Assembly, mobilization and disassembly of nucleosomes can influence the regulation of
gene expression and other processes that act on eukaryotic DNA. Distinct nucleosome …

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

Y Field, N Kaplan, Y Fondufe-Mittendorf… - PLoS computational …, 2008 - journals.plos.org
The detailed positions of nucleosomes profoundly impact gene regulation and are partly
encoded by the genomic DNA sequence. However, less is known about the functional …

Ruler elements in chromatin remodelers set nucleosome array spacing and phasing

E Oberbeckmann, V Niebauer, S Watanabe… - Nature …, 2021 - nature.com
Arrays of regularly spaced nucleosomes dominate chromatin and are often phased by
alignment to reference sites like active promoters. How the distances between nucleosomes …

Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

A Sabantsev, RF Levendosky, X Zhuang… - Nature …, 2019 - nature.com
ATP-dependent chromatin remodelling enzymes (remodellers) regulate DNA accessibility in
eukaryotic genomes. Many remodellers reposition (slide) nucleosomes, however, how DNA …

Stable and dynamic nucleosome states during a meiotic developmental process

L Zhang, H Ma, BF Pugh - Genome research, 2011 - genome.cshlp.org
The plasticity of chromatin organization as chromosomes undergo a full compendium of
transactions including DNA replication, recombination, chromatin compaction, and changes …

The nucleosome core particle remembers its position through DNA replication and RNA transcription

G Schlissel, J Rine - … of the National Academy of Sciences, 2019 - National Acad Sciences
Nucleosomes are the fundamental structural unit of chromatin. In addition to stabilizing the
DNA polymer, nucleosomes are modified in ways that reflect and affect gene expression in …

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

S Shivaswamy, A Bhinge, Y Zhao, S Jones, M Hirst… - PLoS …, 2008 - journals.plos.org
The eukaryotic genome is packaged as chromatin with nucleosomes comprising its basic
structural unit, but the detailed structure of chromatin and its dynamic remodeling in terms of …

Epigenetic cell memory: The gene's inner chromatin modification circuit

S Bruno, RJ Williams… - PLoS computational …, 2022 - journals.plos.org
Epigenetic cell memory allows distinct gene expression patterns to persist in different cell
types despite a common genotype. Although different patterns can be maintained by the …