Discovery of candidate DNA methylation cancer driver genes

H Pan, L Renaud, R Chaligne, J Bloehdorn, E Tausch… - Cancer discovery, 2021 - AACR
Epigenetic alterations, such as promoter hypermethylation, may drive cancer through tumor
suppressor gene inactivation. However, we have limited ability to differentiate driver DNA …

[HTML][HTML] DNA methylation screening identifies driver epigenetic events of cancer cell survival

DD De Carvalho, S Sharma, JS You, SF Su… - Cancer cell, 2012 - cell.com
Cancer cells typically exhibit aberrant DNA methylation patterns that can drive malignant
transformation. Whether cancer cells are dependent on these abnormal epigenetic …

Methods for genome-wide DNA methylation analysis in human cancer

S Fan, W Chi - Briefings in Functional Genomics, 2016 - academic.oup.com
Aberrant DNA methylation is considered to be one of the most common hallmarks of cancer.
Several recent advances in assessing the DNA methylome provide great promise for …

Complex impact of DNA methylation on transcriptional dysregulation across 22 human cancer types

Z Wang, J Yin, W Zhou, J Bai, Y Xie, K Xu… - Nucleic Acids …, 2020 - academic.oup.com
Accumulating evidence has demonstrated that transcriptional regulation is affected by DNA
methylation. Understanding the perturbation of DNA methylation-mediated regulation …

[HTML][HTML] An integrative pan-cancer-wide analysis of epigenetic enzymes reveals universal patterns of epigenomic deregulation in cancer

Z Yang, A Jones, M Widschwendter, AE Teschendorff - Genome biology, 2015 - Springer
Background One of the most important recent findings in cancer genomics is the
identification of novel driver mutations which often target genes that regulate genome-wide …

[HTML][HTML] Impact of mutations in DNA methylation modification genes on genome-wide methylation landscapes and downstream gene activations in pan-cancer

CJ Lee, H Ahn, D Jeong, M Pak, JH Moon… - BMC medical genomics, 2020 - Springer
Background In cancer, mutations of DNA methylation modification genes have crucial roles
for epigenetic modifications genome-wide, which lead to the activation or suppression of …

DNMIVD: DNA methylation interactive visualization database

W Ding, J Chen, G Feng, G Chen, J Wu… - Nucleic acids …, 2020 - academic.oup.com
Aberrant DNA methylation plays an important role in cancer progression. However, no
resource has been available that comprehensively provides DNA methylation-based …

[HTML][HTML] Tissue-independent and tissue-specific patterns of DNA methylation alteration in cancer

Y Chen, CE Breeze, S Zhen, S Beck… - Epigenetics & …, 2016 - Springer
Background There is growing evidence that DNA methylation alterations contribute to
carcinogenesis. While cancer tissue exhibits widespread DNA methylation changes, the …

[HTML][HTML] Pan-cancer landscape of aberrant DNA methylation across human tumors

S Saghafinia, M Mina, N Riggi, D Hanahan, G Ciriello - Cell reports, 2018 - cell.com
The discovery of cancer-associated alterations has primarily focused on genetic variants.
Nonetheless, altered epigenomes contribute to deregulate transcription and promote …

[HTML][HTML] Pan-cancer predictions of transcription factors mediating aberrant DNA methylation

D Detilleux, YG Spill, D Balaramane, M Weber… - Epigenetics & …, 2022 - Springer
Background Aberrant DNA methylation is a hallmark of cancer cells. However, the
mechanisms underlying changes in DNA methylation remain elusive. Transcription factors …