A DNA methylation state transition model reveals the programmed epigenetic heterogeneity in human pre-implantation embryos

C Zhao, N Zhang, Y Zhang, N Tuersunjiang, S Gao… - Genome Biology, 2020 - Springer
Background During mammalian early embryogenesis, expression and epigenetic
heterogeneity emerge before the first cell fate determination, but the programs causing such …

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

L Chavez, J Jozefczuk, C Grimm, J Dietrich… - Genome …, 2010 - genome.cshlp.org
The generation of genome-wide data derived from methylated DNA immunoprecipitation
followed by sequencing (MeDIP-seq) has become a major tool for epigenetic studies in …

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

O Bogdanović, SW Long, SJ van Heeringen… - Genome …, 2011 - genome.cshlp.org
DNA methylation is a tightly regulated epigenetic mark associated with transcriptional
repression. Next-generation sequencing of purified methylated DNA obtained from early …

Single-cell DNA methylome sequencing of human preimplantation embryos

P Zhu, H Guo, Y Ren, Y Hou, J Dong, R Li, Y Lian… - Nature …, 2018 - nature.com
DNA methylation is a crucial layer of epigenetic regulation during mammalian embryonic
development,–. Although the DNA methylome of early human embryos has been analyzed …

De novo DNA methylation during monkey pre-implantation embryogenesis

F Gao, Y Niu, YE Sun, H Lu, Y Chen, S Li, Y Kang… - Cell research, 2017 - nature.com
Critical epigenetic regulation of primate embryogenesis entails DNA methylome changes.
Here we report genome-wide composition, patterning, and stage-specific dynamics of DNA …

DNA methylation heterogeneity induced by collaborations between enhancers

Y Ye, Z Yang, J Lei - Journal of Computational Biology, 2020 - liebertpub.com
During mammalian embryo development, reprogramming of DNA methylation plays
important roles in the erasure of parental epigenetic memory and the establishment of naive …

Comprehensive spatiotemporal DNA methylation analysis of mouse tissue and organ progression through fetal development to adulthood

E Elder, S McGraw - Biology of Reproduction, 2020 - academic.oup.com
The precise and timely expression of genes, starting as soon as initial fertilization and
continuously throughout fetal tissue progression, is crucial to ensure the proper …

Dynamic epigenomic landscapes during early lineage specification in mouse embryos

Y Zhang, Y Xiang, Q Yin, Z Du, X Peng, Q Wang… - Nature …, 2018 - nature.com
In mammals, all somatic development originates from lineage segregation in early embryos.
However, the dynamics of transcriptomes and epigenomes acting in concert with initial cell …

Reprogramming of DNA methylation is linked to successful human preimplantation development

J Arand, RA Reijo Pera, M Wossidlo - Histochemistry and Cell Biology, 2021 - Springer
Human preimplantation development is characterized by low developmental rates that are
poorly understood. Early mammalian embryogenesis is characterized by a major phase of …

The dynamics of DNA methylation fidelity during mouse embryonic stem cell self-renewal and differentiation

L Zhao, M Sun, Z Li, X Bai, M Yu, M Wang… - Genome …, 2014 - genome.cshlp.org
The faithful transmission of DNA methylation patterns through cell divisions is essential for
the daughter cells to retain a proper cell identity. To achieve a comprehensive assessment …