g: Profiler—a web server for functional interpretation of gene lists (2011 update)

J Reimand, T Arak, J Vilo - Nucleic acids research, 2011 - academic.oup.com
Functional interpretation of candidate gene lists is an essential task in modern biomedical
research. Here, we present the 2011 update of g: Profiler (http://biit. cs. ut. ee/gprofiler/), a …

g: Profiler—a web server for functional interpretation of gene lists (2016 update)

J Reimand, T Arak, P Adler, L Kolberg… - Nucleic acids …, 2016 - academic.oup.com
Functional enrichment analysis is a key step in interpreting gene lists discovered in diverse
high-throughput experiments. g: Profiler studies flat and ranked gene lists and finds …

g: Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)

L Kolberg, U Raudvere, I Kuzmin, P Adler… - Nucleic acids …, 2023 - academic.oup.com
Abstract g: Profiler is a reliable and up-to-date functional enrichment analysis tool that
supports various evidence types, identifier types and organisms. The toolset integrates many …

g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments

J Reimand, M Kull, H Peterson, J Hansen… - Nucleic acids …, 2007 - academic.oup.com
Abstract g: Profiler (http://biit. cs. ut. ee/gprofiler/) is a public web server for characterising
and manipulating gene lists resulting from mining high-throughput genomic data. g: Profiler …

GeneTools – application for functional annotation and statistical hypothesis testing

V Beisvag, FKR Jünge, H Bergum, L Jølsum… - BMC …, 2006 - Springer
Background Modern biology has shifted from" one gene" approaches to methods for
genomic-scale analysis like microarray technology, which allow simultaneous measurement …

SigCom LINCS: data and metadata search engine for a million gene expression signatures

JE Evangelista, DJB Clarke, Z Xie… - Nucleic acids …, 2022 - academic.oup.com
Millions of transcriptome samples were generated by the Library of Integrated Network-
based Cellular Signatures (LINCS) program. When these data are processed into …

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information

R Nogales-Cadenas, P Carmona-Saez… - Nucleic acids …, 2009 - academic.oup.com
GeneCodis is a web server application for functional analysis of gene lists that integrates
different sources of information and finds modular patterns of interrelated annotations. This …

[HTML][HTML] gprofiler2--an R package for gene list functional enrichment analysis and namespace conversion toolset g: Profiler

L Kolberg, U Raudvere, I Kuzmin, J Vilo… - …, 2020 - ncbi.nlm.nih.gov
Abstract g: Profiler (https://biit. cs. ut. ee/gprofiler) is a widely used gene list functional
profiling and namespace conversion toolset that has been contributing to reproducible …

WEB-based gene set analysis toolkit (WebGestalt): update 2013

J Wang, D Duncan, Z Shi, B Zhang - Nucleic acids research, 2013 - academic.oup.com
Functional enrichment analysis is an essential task for the interpretation of gene lists derived
from large-scale genetic, transcriptomic and proteomic studies. WebGestalt (WEB-based …

DAVID-WS: a stateful web service to facilitate gene/protein list analysis

X Jiao, BT Sherman, DW Huang, R Stephens… - …, 2012 - academic.oup.com
The database for annotation, visualization and integrated discovery (DAVID), which can be
freely accessed at http://david. abcc. ncifcrf. gov/, is a web-based online bioinformatics …