[HTML][HTML] Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

J Wan, VF Oliver, G Wang, H Zhu, DJ Zack, SL Merbs… - BMC genomics, 2015 - Springer
Background DNA methylation plays an important role in regulating gene expression during
many biological processes. However, the mechanism of DNA-methylation-dependent gene …

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

S Yagi, K Hirabayashi, S Sato, W Li… - Genome …, 2008 - genome.cshlp.org
DNA methylation constitutes an important epigenetic regulation mechanism in many
eukaryotes, although the extent of DNA methylation in the regulation of gene expression in …

[HTML][HTML] On the presence and role of human gene-body DNA methylation

D Jjingo, AB Conley, VY Soojin, VV Lunyak, IK Jordan - Oncotarget, 2012 - ncbi.nlm.nih.gov
DNA methylation of promoter sequences is a repressive epigenetic mark that down-
regulates gene expression. However, DNA methylation is more prevalent within gene …

[HTML][HTML] Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation

J Zhou, RL Sears, X Xing, B Zhang, D Li… - BMC genomics, 2017 - Springer
Background Uncovering mechanisms of epigenome evolution is an essential step towards
understanding the evolution of different cellular phenotypes. While studies have confirmed …

Emerging concept in DNA methylation: role of transcription factors in shaping DNA methylation patterns

C Marchal, B Miotto - Journal of cellular physiology, 2015 - Wiley Online Library
DNA methylation in mammals is a key epigenetic modification essential to normal genome
regulation and development. DNA methylation patterns are established during early …

[HTML][HTML] Genome-wide quantification of the effects of DNA methylation on human gene regulation

AJ Lea, CM Vockley, RA Johnston, CA Del Carpio… - elife, 2018 - elifesciences.org
Changes in DNA methylation are involved in development, disease, and the response to
environmental conditions. However, not all regulatory elements are functionally methylation …

Genome-wide analysis reveals that exon methylation facilitates its selective usage in the human transcriptome

S Li, J Zhang, S Huang, X He - Briefings in Bioinformatics, 2018 - academic.oup.com
DNA methylation, especially in promoter regions, is a well-characterized epigenetic marker
related to gene expression regulation in eukaryotes. However, the role of intragenic DNA …

[HTML][HTML] Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

P Liang, F Song, S Ghosh, E Morien, M Qin… - BMC genomics, 2011 - Springer
Background Changes in DNA methylation in the mammalian genome during development
are frequent events and play major roles regulating gene expression and other …

Epigenetics: differential DNA methylation in mammalian somatic tissues

H Nagase, S Ghosh - The FEBS journal, 2008 - Wiley Online Library
Epigenetics refers to heritable phenotypic alterations in the absence of DNA sequence
changes, and DNA methylation is one of the extensively studied epigenetic alterations. DNA …

[HTML][HTML] DNA methylation and regulation of gene expression: Guardian of our health

GA Dhar, S Saha, P Mitra, R Nag Chaudhuri - The Nucleus, 2021 - Springer
One of the most critical epigenetic signatures present in the genome of higher eukaryotes is
the methylation of DNA at the C-5 position of the cytosine ring. Based on the sites of DNA …