[HTML][HTML] Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation
AE Teschendorff, A Jones, H Fiegl, A Sargent… - Genome medicine, 2012 - Springer
Background Recently, it has been proposed that epigenetic variation may contribute to the
risk of complex genetic diseases like cancer. We aimed to demonstrate that epigenetic …
risk of complex genetic diseases like cancer. We aimed to demonstrate that epigenetic …
Differential variability improves the identification of cancer risk markers in DNA methylation studies profiling precursor cancer lesions
AE Teschendorff, M Widschwendter - Bioinformatics, 2012 - academic.oup.com
Motivation: The standard paradigm in omic disciplines has been to identify biologically
relevant biomarkers using statistics that reflect differences in mean levels of a molecular …
relevant biomarkers using statistics that reflect differences in mean levels of a molecular …
[HTML][HTML] The dynamics of DNA methylation covariation patterns in carcinogenesis
Recently it has been observed that cancer tissue is characterised by an increased variability
in DNA methylation patterns. However, how the correlative patterns in genome-wide DNA …
in DNA methylation patterns. However, how the correlative patterns in genome-wide DNA …
Epigenome-based cancer risk prediction: rationale, opportunities and challenges
M Widschwendter, A Jones, I Evans, D Reisel… - Nature reviews Clinical …, 2018 - nature.com
The incidence of cancer is continuing to rise and risk-tailored early diagnostic and/or primary
prevention strategies are urgently required. The ideal risk-predictive test should: integrate …
prevention strategies are urgently required. The ideal risk-predictive test should: integrate …
Estimation of a significance threshold for epigenome‐wide association studies
Epigenome‐wide association studies (EWAS) are designed to characterise population‐level
epigenetic differences across the genome and link them to disease. Most commonly, they …
epigenetic differences across the genome and link them to disease. Most commonly, they …
[HTML][HTML] DNA methylation patterns in normal tissue correlate more strongly with breast cancer status than copy-number variants
Y Gao, M Widschwendter, AE Teschendorff - EBioMedicine, 2018 - thelancet.com
Normal tissue at risk of neoplastic transformation is characterized by somatic mutations,
copy-number variation and DNA methylation changes. It is unclear however, which type of …
copy-number variation and DNA methylation changes. It is unclear however, which type of …
[HTML][HTML] A comparison of epigenetic mitotic-like clocks for cancer risk prediction
AE Teschendorff - Genome Medicine, 2020 - Springer
Background DNA methylation changes that accrue in the stem cell pool of an adult tissue in
line with the cumulative number of cell divisions may contribute to the observed variation in …
line with the cumulative number of cell divisions may contribute to the observed variation in …
[HTML][HTML] Accounting for cellular heterogeneity is critical in epigenome-wide association studies
AE Jaffe, RA Irizarry - Genome biology, 2014 - Springer
Background Epigenome-wide association studies of human disease and other quantitative
traits are becoming increasingly common. A series of papers reporting age-related changes …
traits are becoming increasingly common. A series of papers reporting age-related changes …
Is cellular heterogeneity merely a confounder to be removed from epigenome-wide association studies?
Excitement about DNA methylation biomarkers has been tempered by a growing
appreciation of the complex causal relations with cell fate. Intersample differences in DNA …
appreciation of the complex causal relations with cell fate. Intersample differences in DNA …
Predicting DNA methylation level across human tissues
B Ma, EH Wilker, SAG Willis-Owen… - Nucleic acids …, 2014 - academic.oup.com
Differences in methylation across tissues are critical to cell differentiation and are key to
understanding the role of epigenetics in complex diseases. In this investigation, we found …
understanding the role of epigenetics in complex diseases. In this investigation, we found …