Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos
DNA methylation undergoes dynamic changes during development and cell differentiation.
Recent genome-wide studies discovered that tissue-specific differentially methylated …
Recent genome-wide studies discovered that tissue-specific differentially methylated …
Genomics of CpG methylation in developing and developed zebrafish
DM McGaughey, HO Abaan, RM Miller… - G3: Genes …, 2014 - academic.oup.com
DNA methylation is a dynamic process through which specific chromatin modifications can
be stably transmitted from parent to daughter cells. A large body of work has suggested that …
be stably transmitted from parent to daughter cells. A large body of work has suggested that …
Developmental features of DNA methylation during activation of the embryonic zebrafish genome
Background Zygotic genome activation (ZGA) occurs at the mid-blastula transition (MBT) in
zebrafish and is a period of extensive chromatin remodeling. Genome-scale gametic …
zebrafish and is a period of extensive chromatin remodeling. Genome-scale gametic …
Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species
SE Ross, J Vázquez-Marín, KRB Gert… - Nucleic Acids …, 2023 - academic.oup.com
Methylation of cytosines in the CG context (mCG) is the most abundant DNA modification in
vertebrates that plays crucial roles in cellular differentiation and identity. After fertilization …
vertebrates that plays crucial roles in cellular differentiation and identity. After fertilization …
MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data
DNA methylation plays crucial roles during embryonic development. Here we present
MethBank (http://dnamethylome. org), a DNA methylome programming database that …
MethBank (http://dnamethylome. org), a DNA methylome programming database that …
Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates
R Nakamura, T Tsukahara, W Qu, K Ichikawa… - …, 2014 - journals.biologists.com
DNA methylation is a fundamental epigenetic modification in vertebrate genomes and a
small fraction of genomic regions is hypomethylated. Previous studies have implicated …
small fraction of genomic regions is hypomethylated. Previous studies have implicated …
Enhancers reside in a unique epigenetic environment during early zebrafish development
Background Enhancers, not promoters, are the most dynamic in their DNA methylation
status throughout development and differentiation. Generally speaking, enhancers that are …
status throughout development and differentiation. Generally speaking, enhancers that are …
Comparative epigenomic profiling of the DNA methylome in mouse and zebrafish uncovers high interspecies divergence
The DNA methylation landscape is dynamically patterned during development and distinct
methylation patterns distinguish healthy from diseased cells. However, whether tissue …
methylation patterns distinguish healthy from diseased cells. However, whether tissue …
[HTML][HTML] Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos
E de la Calle Mustienes, JL Gómez-Skarmeta… - Genomics data, 2015 - Elsevier
DNA methylation and histone modifications are epigenetic marks implicated in the complex
regulation of vertebrate embryogenesis. The cross-talk between DNA methylation and …
regulation of vertebrate embryogenesis. The cross-talk between DNA methylation and …
The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos
O Bogdanović, A Fernández-Miñán, JJ Tena… - Methods, 2013 - Elsevier
Genome-wide profiling of DNA methylation and histone modifications answered many
questions as to how the genes are regulated on a global scale and what their epigenetic …
questions as to how the genes are regulated on a global scale and what their epigenetic …