Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos

HJ Lee, RF Lowdon, B Maricque, B Zhang… - Nature …, 2015 - nature.com
DNA methylation undergoes dynamic changes during development and cell differentiation.
Recent genome-wide studies discovered that tissue-specific differentially methylated …

Genomics of CpG methylation in developing and developed zebrafish

DM McGaughey, HO Abaan, RM Miller… - G3: Genes …, 2014 - academic.oup.com
DNA methylation is a dynamic process through which specific chromatin modifications can
be stably transmitted from parent to daughter cells. A large body of work has suggested that …

Developmental features of DNA methylation during activation of the embryonic zebrafish genome

IS Andersen, AH Reiner, H Aanes, P Aleström, P Collas - Genome biology, 2012 - Springer
Background Zygotic genome activation (ZGA) occurs at the mid-blastula transition (MBT) in
zebrafish and is a period of extensive chromatin remodeling. Genome-scale gametic …

Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species

SE Ross, J Vázquez-Marín, KRB Gert… - Nucleic Acids …, 2023 - academic.oup.com
Methylation of cytosines in the CG context (mCG) is the most abundant DNA modification in
vertebrates that plays crucial roles in cellular differentiation and identity. After fertilization …

MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data

D Zou, S Sun, R Li, J Liu, J Zhang… - Nucleic acids …, 2015 - academic.oup.com
DNA methylation plays crucial roles during embryonic development. Here we present
MethBank (http://dnamethylome. org), a DNA methylome programming database that …

Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates

R Nakamura, T Tsukahara, W Qu, K Ichikawa… - …, 2014 - journals.biologists.com
DNA methylation is a fundamental epigenetic modification in vertebrate genomes and a
small fraction of genomic regions is hypomethylated. Previous studies have implicated …

Enhancers reside in a unique epigenetic environment during early zebrafish development

LJT Kaaij, M Mokry, M Zhou, M Musheev, G Geeven… - Genome biology, 2016 - Springer
Background Enhancers, not promoters, are the most dynamic in their DNA methylation
status throughout development and differentiation. Generally speaking, enhancers that are …

Comparative epigenomic profiling of the DNA methylome in mouse and zebrafish uncovers high interspecies divergence

C Zhang, Y Hoshida, KC Sadler - Frontiers in Genetics, 2016 - frontiersin.org
The DNA methylation landscape is dynamically patterned during development and distinct
methylation patterns distinguish healthy from diseased cells. However, whether tissue …

[HTML][HTML] Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos

E de la Calle Mustienes, JL Gómez-Skarmeta… - Genomics data, 2015 - Elsevier
DNA methylation and histone modifications are epigenetic marks implicated in the complex
regulation of vertebrate embryogenesis. The cross-talk between DNA methylation and …

The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos

O Bogdanović, A Fernández-Miñán, JJ Tena… - Methods, 2013 - Elsevier
Genome-wide profiling of DNA methylation and histone modifications answered many
questions as to how the genes are regulated on a global scale and what their epigenetic …