Abstract ChIP-Atlas (https://chip-atlas. org) is a web service providing both GUI-and API-
based data-mining tools to reveal the architecture of the transcription regulatory landscape …

Chromatin regulatory landscape plays a critical role in many disease processes and embryo
development. Epigenome sequencing technologies such as chromatin immunoprecipitation …

Due to the rapidly increasing scale and diversity of epigenomic data, modular and scalable
analysis workflows are of wide interest. Here we present snakePipes, a workflow package …

The increasing volume of ChIP-chip and ChIP-seq data being generated creates a
challenge for standard, integrative and reproducible bioinformatics data analysis platforms …

We have fully integrated public chromatin chromatin immunoprecipitation sequencing (Ch IP‐
seq) and DN ase‐seq data (n> 70,000) derived from six representative model organisms …

Eukaryotic gene transcription is regulated by a large cohort of chromatin-associated
proteins, and inferring their differential binding sites between cellular contexts requires a …

Abstract The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory
information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin profiling assays …

With this latest release of ReMap (http://remap. cisreg. eu), we present a unique collection of
regulatory regions in human, as a result of a large-scale integrative analysis of ChIP-seq …

The large collections of ChIP-seq data rapidly accumulating in public data warehouses
provide genome-wide binding site maps for hundreds of transcription factors (TFs) …

Mapping the chromosomal locations of transcription factors, nucleosomes, histone
modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the …