DNA methylation dynamics during early plant life

D Bouyer, A Kramdi, M Kassam, M Heese, A Schnittger… - Genome biology, 2017 - Springer
Background Cytosine methylation is crucial for gene regulation and silencing of
transposable elements in mammals and plants. While this epigenetic mark is extensively …

Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis

X Zhang, J Yazaki, A Sundaresan, S Cokus, SWL Chan… - Cell, 2006 - cell.com
Cytosine methylation is important for transposon silencing and epigenetic regulation of
endogenous genes, although the extent to which this DNA modification functions to regulate …

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

D Zilberman, M Gehring, RK Tran, T Ballinger… - Nature …, 2007 - nature.com
Cytosine methylation, a common form of DNA modification that antagonizes transcription, is
found at transposons and repeats in vertebrates, plants and fungi. Here we have mapped …

Local DNA hypomethylation activates genes in rice endosperm

A Zemach, MY Kim, P Silva… - Proceedings of the …, 2010 - National Acad Sciences
Cytosine methylation silences transposable elements in plants, vertebrates, and fungi but
also regulates gene expression. Plant methylation is catalyzed by three families of enzymes …

Dynamic DNA methylation reconfiguration during seed development and germination

T Kawakatsu, JR Nery, R Castanon, JR Ecker - Genome biology, 2017 - Springer
Background Unlike animals, plants can pause their life cycle as dormant seeds. In both
plants and animals, DNA methylation is involved in the regulation of gene expression and …

Evolutionary patterns of genic DNA methylation vary across land plants

S Takuno, JH Ran, BS Gaut - Nature plants, 2016 - nature.com
Little is known about patterns of genic DNA methylation across the plant kingdom or about
the evolutionary processes that shape them. To characterize gene-body methylation (gbM) …

Dynamic DNA methylation in plant growth and development

A Bartels, Q Han, P Nair, L Stacey, H Gaynier… - International journal of …, 2018 - mdpi.com
DNA methylation is an epigenetic modification required for transposable element (TE)
silencing, genome stability, and genomic imprinting. Although DNA methylation has been …

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis

RK Tran, D Zilberman, C de Bustos, RF Ditt… - Genome biology, 2005 - Springer
Background DNA methylation occurs at preferred sites in eukaryotes. In Arabidopsis, DNA
cytosine methylation is maintained by three subfamilies of methyltransferases with distinct …

DNA methylation underpins the epigenomic landscape regulating genome transcription in Arabidopsis

L Zhao, Q Zhou, L He, L Deng, R Lozano-Duran, G Li… - Genome biology, 2022 - Springer
Background It is challenging to determine the effect of DNA methylation on the epigenetic
landscape and the function in higher organisms due to the lack of DNA methylation-free …

Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability

L He, C Zhao, Q Zhang, G Zinta… - Proceedings of the …, 2021 - National Acad Sciences
The CMT2 and RNA-directed DNA methylation (RdDM) pathways have been proposed to
separately maintain CHH methylation in specific regions of the Arabidopsis thaliana …