Statistical and integrative system-level analysis of DNA methylation data
AE Teschendorff, CL Relton - Nature Reviews Genetics, 2018 - nature.com
Epigenetics plays a key role in cellular development and function. Alterations to the
epigenome are thought to capture and mediate the effects of genetic and environmental risk …
epigenome are thought to capture and mediate the effects of genetic and environmental risk …
An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies
K McGregor, S Bernatsky, I Colmegna, M Hudson… - Genome biology, 2016 - Springer
Background Many different methods exist to adjust for variability in cell-type mixture
proportions when analyzing DNA methylation studies. Here we present the result of an …
proportions when analyzing DNA methylation studies. Here we present the result of an …
Analysing and interpreting DNA methylation data
C Bock - Nature Reviews Genetics, 2012 - nature.com
DNA methylation is an epigenetic mark that has suspected regulatory roles in a broad range
of biological processes and diseases. The technology is now available for studying DNA …
of biological processes and diseases. The technology is now available for studying DNA …
An overview of DNA methylation-derived trait score methods and applications
Microarray technology has been used to measure genome-wide DNA methylation in
thousands of individuals. These studies typically test the associations between individual …
thousands of individuals. These studies typically test the associations between individual …
DNA methylation-based predictors of health: applications and statistical considerations
DNA methylation data have become a valuable source of information for biomarker
development, because, unlike static genetic risk estimates, DNA methylation varies …
development, because, unlike static genetic risk estimates, DNA methylation varies …
MeDeCom: discovery and quantification of latent components of heterogeneous methylomes
It is important for large-scale epigenomic studies to determine and explore the nature of
hidden confounding variation, most importantly cell composition. We developed MeDeCom …
hidden confounding variation, most importantly cell composition. We developed MeDeCom …
Statistical methods for detecting differentially methylated loci and regions
DNA methylation, the reversible addition of methyl groups at CpG dinucleotides, represents
an important regulatory layer associated with gene expression. Changed methylation status …
an important regulatory layer associated with gene expression. Changed methylation status …
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
DNA methylation plays key roles in diverse biological processes such as X chromosome
inactivation, transposable element repression, genomic imprinting, and tissue-specific gene …
inactivation, transposable element repression, genomic imprinting, and tissue-specific gene …
Introduction to epigenomics and epigenome-wide analysis
MJ Fazzari, JM Greally - Statistical Methods in Molecular Biology, 2010 - Springer
Epigenetics is the study of heritable change other than those encoded in DNA sequence.
Cytosine methylation of DNA at CpG dinucleotides is the most well-studied epigenetic …
Cytosine methylation of DNA at CpG dinucleotides is the most well-studied epigenetic …
Genome‐wide DNA methylation profiling
M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
DNA methylation plays a critical role in the regulation of gene expression. The ability to
access the methylation status for a large number of genes or the entire genome should …
access the methylation status for a large number of genes or the entire genome should …