Predicting antigen presentation—what could we learn from a million peptides?
D Gfeller, M Bassani-Sternberg - Frontiers in immunology, 2018 - frontiersin.org
Antigen presentation lies at the heart of immune recognition of infected or malignant cells.
For this reason, important efforts have been made to predict which peptides are more likely …
For this reason, important efforts have been made to predict which peptides are more likely …
[HTML][HTML] Defining HLA-II ligand processing and binding rules with mass spectrometry enhances cancer epitope prediction
Increasing evidence indicates CD4+ T cells can recognize cancer-specific antigens and
control tumor growth. However, it remains difficult to predict the antigens that will be …
control tumor growth. However, it remains difficult to predict the antigens that will be …
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity
M Bassani-Sternberg, C Chong… - PLoS computational …, 2017 - journals.plos.org
The precise identification of Human Leukocyte Antigen class I (HLA-I) binding motifs plays a
central role in our ability to understand and predict (neo-) antigen presentation in infectious …
central role in our ability to understand and predict (neo-) antigen presentation in infectious …
Mass spectrometry based immunopeptidomics leads to robust predictions of phosphorylated HLA class I ligands
M Solleder, P Guillaume, J Racle, J Michaux… - Molecular & Cellular …, 2020 - ASBMB
The presentation of peptides on class I human leukocyte antigen (HLA-I) molecules plays a
central role in immune recognition of infected or malignant cells. In cancer, non-self HLA-I …
central role in immune recognition of infected or malignant cells. In cancer, non-self HLA-I …
A large peptidome dataset improves HLA class I epitope prediction across most of the human population
Prediction of HLA epitopes is important for the development of cancer immunotherapies and
vaccines. However, current prediction algorithms have limited predictive power, in part …
vaccines. However, current prediction algorithms have limited predictive power, in part …
The role of mass spectrometry and proteogenomics in the advancement of HLA epitope prediction
A challenge in developing personalized cancer immunotherapies is the prediction of
putative cancer‐specific antigens. Currently, predictive algorithms are used to infer binding …
putative cancer‐specific antigens. Currently, predictive algorithms are used to infer binding …
The pockets guide to HLA class I molecules
Human leukocyte antigens (HLA) are cell-surface proteins that present peptides to T cells.
These peptides are bound within the peptide binding cleft of HLA, and together as a …
These peptides are bound within the peptide binding cleft of HLA, and together as a …
Mass spectrometry profiling of HLA-associated peptidomes in mono-allelic cells enables more accurate epitope prediction
Identification of human leukocyte antigen (HLA)-bound peptides by liquid chromatography-
tandem mass spectrometry (LC-MS/MS) is poised to provide a deep understanding of rules …
tandem mass spectrometry (LC-MS/MS) is poised to provide a deep understanding of rules …
Mapping the tumour human leukocyte antigen (HLA) ligandome by mass spectrometry
LK Freudenmann, A Marcu, S Stevanović - Immunology, 2018 - Wiley Online Library
The entirety of human leukocyte antigen (HLA)‐presented peptides is referred to as the HLA
ligandome of a cell or tissue, in tumours often termed immunopeptidome. Mapping the …
ligandome of a cell or tissue, in tumours often termed immunopeptidome. Mapping the …
Unveiling the peptide motifs of HLA-C and HLA-G from naturally presented peptides and generation of binding prediction matrices
M Di Marco, H Schuster, L Backert… - The Journal of …, 2017 - journals.aai.org
The classical HLA-C and the nonclassical HLA-E and HLA-G molecules play important roles
both in the innate and adaptive immune system. Starting already during embryogenesis and …
both in the innate and adaptive immune system. Starting already during embryogenesis and …