[PDF][PDF] Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants

T Shi, RS Rahmani, PF Gugger, M Wang… - Molecular biology …, 2020 - academic.oup.com
For most sequenced flowering plants, multiple whole-genome duplications (WGDs) are
found. Duplicated genes following WGD often have different fates that can quickly disappear …

Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants

W Jiang, Y Liu, E Xia, L Gao - Plant physiology, 2013 - academic.oup.com
The evolution of genes and genomes after polyploidization has been the subject of
extensive studies in evolutionary biology and plant sciences. While a significant number of …

Coordinated Functional Divergence of Genes after Genome Duplication in Arabidopsis thaliana

R De Smet, E Sabaghian, Z Li, Y Saeys… - The plant …, 2017 - academic.oup.com
Gene and genome duplications have been rampant during the evolution of flowering plants.
Unlike small-scale gene duplications, whole-genome duplications (WGDs) copy entire …

[PDF][PDF] Widespread whole genome duplications contribute to genome complexity and species diversity in angiosperms

R Ren, H Wang, C Guo, N Zhang, L Zeng, Y Chen… - Molecular plant, 2018 - cell.com
Gene duplications provide evolutionary potentials for generating novel functions, while
polyploidization or whole genome duplication (WGD) doubles the chromosomes initially and …

[HTML][HTML] Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

The evolution of gene duplicates in angiosperms and the impact of protein–protein interactions and the mechanism of duplication

J Defoort, Y Van de Peer… - Genome Biology and …, 2019 - academic.oup.com
Gene duplicates, generated through either whole genome duplication (WGD) or small-scale
duplication (SSD), are prominent in angiosperms and are believed to play an important role …

[HTML][HTML] Divergence of gene body DNA methylation and evolution of plant duplicate genes

J Wang, NC Marowsky, C Fan - PloS one, 2014 - journals.plos.org
It has been shown that gene body DNA methylation is associated with gene expression.
However, whether and how deviation of gene body DNA methylation between duplicate …

[HTML][HTML] Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms

Y Wang, X Wang, H Tang, X Tan, SP Ficklin, FA Feltus… - PloS one, 2011 - journals.plos.org
Background Both single gene and whole genome duplications (WGD) have recurred in
angiosperm evolution. However, the evolutionary effects of different modes of gene …

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

R De Smet, KL Adams, K Vandepoele… - Proceedings of the …, 2013 - National Acad Sciences
The importance of gene gain through duplication has long been appreciated. In contrast, the
importance of gene loss has only recently attracted attention. Indeed, studies in organisms …

[HTML][HTML] Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

T Casneuf, S De Bodt, J Raes, S Maere, Y Van de Peer - Genome biology, 2006 - Springer
Background Genome analyses have revealed that gene duplication in plants is rampant.
Furthermore, many of the duplicated genes seem to have been created through ancient …