Insights into nonspecific binding of homeodomains from a structure of MATα2 bound to DNA

J Aishima, C Wolberger - Proteins: Structure, Function, and …, 2003 - Wiley Online Library
Abstract The 2.1‐Å resolution crystal structure of the MATα2 homeodomain bound to DNA
reveals the unexpected presence of two nonspecifically bound α2 homeodomains, in …

Crystal structure of a MATα2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions

C Wolberger, AK Vershon, B Liu, AD Johnson… - Cell, 1991 - cell.com
The MATa homeodomain regulates the expression of cell type-specific genes in yeast. We
have determined the 2.7 A resolution crystal structure of the a2 homeodomain bound to a …

Energetics of folding and DNA binding of the MATα2 homeodomain

JH Carra, PL Privalov - Biochemistry, 1997 - ACS Publications
Homeodomains are a class of DNA-binding protein domains which play an important role in
genetic regulation in eukaryotes. We have characterized the thermodynamics of folding and …

Cooperative Ordering in Homeodomain− DNA Recognition: Solution Structure and Dynamics of the MAT a 1 Homeodomain

JS Anderson, MD Forman, S Modleski… - Biochemistry, 2000 - ACS Publications
The mating type homeodomain proteins, MAT a 1 and MATα2, combine to form a
heterodimer to bind DNA in diploid yeast cells. The a 1− α2 heterodimer tightly and …

Altering the DNA-binding Specificity of the Yeast Matα2 Homeodomain Protein

JR Mathias, H Zhong, Y Jin, AK Vershon - Journal of Biological Chemistry, 2001 - ASBMB
Homeodomain proteins are a highly conserved class of DNA-binding proteins that are found
in virtually every eukaryotic organism. The conserved mechanism that these proteins use to …

Engineered improvements in DNA-binding function of the MATa1 homeodomain reveal structural changes involved in combinatorial control

B Hart, JR Mathias, D Ott, L McNaughton… - Journal of molecular …, 2002 - Elsevier
We have engineered enhanced DNA-binding function into the a1 homeodomain by making
changes in a loop distant from the DNA-binding surface. Comparison of the free and bound …

Structure and DNA binding of the yeast MATα2 homeodomain

C Wolberger - Cold Spring Harbor symposia on quantitative …, 1993 - symposium.cshlp.org
The homeodomain proteins form a superfamily of DNA-binding proteins that play a central
role in the regulation of eukaryotic mRNA transcription. First identified as a highly conserved …

Forces driving the binding of homeodomains to DNA

AI Dragan, Z Li, EN Makeyeva, EI Milgotina, Y Liu… - Biochemistry, 2006 - ACS Publications
Homeodomains are helix− turn− helix type DNA-binding domains that exhibit sequence-
specific DNA binding by insertion of their “recognition” α helices into the major groove and a …

Crystal structure of the MATa1/MATα2 homeodomain heterodimer in complex with DNA containing an A-tract

T Li, Y Jin, AK Vershon, C Wolberger - Nucleic acids research, 1998 - academic.oup.com
The crystal structure of the heterodimer formed by the DNA binding domains of the yeast
mating type transcription factors, MATa1 and MATα2, bound to a 21 bp DNA fragment has …

Insights into binding cooperativity of MATa1/MATα2 from the crystal structure of a MATa1 homeodomain‐maltose binding protein chimera

A Ke, C Wolberger - Protein science, 2003 - Wiley Online Library
Abstract The Yeast MATa1 and MATα2 are homeodomain proteins that bind DNA
cooperatively to repress transcription of cell type specific genes. The DNA affinity and …