LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST

D Xie, A Li, M Wang, Z Fan, H Feng - Nucleic acids research, 2005 - academic.oup.com
Subcellular location of a protein is one of the key functional characters as proteins must be
localized correctly at the subcellular level to have normal biological function. In this paper, a …

ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST

M Bhasin, GPS Raghava - Nucleic acids research, 2004 - academic.oup.com
Automated prediction of subcellular localization of proteins is an important step in the
functional annotation of genomes. The existing subcellular localization prediction methods …

ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins

A Garg, GPS Raghava - BMC bioinformatics, 2008 - Springer
Background The expansion of raw protein sequence databases in the post genomic era and
availability of fresh annotated sequences for major localizations particularly motivated us to …

Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search

A Garg, M Bhasin, GPS Raghava - Journal of biological Chemistry, 2005 - ASBMB
Here we report a systematic approach for predicting subcellular localization (cytoplasm,
mitochondrial, nuclear, and plasma membrane) of human proteins. First, support vector …

pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties

D Sarda, GH Chua, KB Li, A Krishnan - Bmc Bioinformatics, 2005 - Springer
Background Protein subcellular localization is an important determinant of protein function
and hence, reliable methods for prediction of localization are needed. A number of …

Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites

KC Chou, HB Shen - Journal of Proteome Research, 2007 - ACS Publications
One of the critical challenges in predicting protein subcellular localization is how to deal with
the case of multiple location sites. Unfortunately, so far, no efforts have been made in this …

A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0

KC Chou, HB Shen - PloS one, 2010 - journals.plos.org
Information of subcellular locations of proteins is important for in-depth studies of cell
biology. It is very useful for proteomics, system biology and drug development as well …

PairProSVM: protein subcellular localization based on local pairwise profile alignment and SVM

MW Mak, J Guo, SY Kung - IEEE/ACM Transactions on …, 2008 - ieeexplore.ieee.org
The subcellular locations of proteins are important functional annotations. An effective and
reliable subcellular localization method is necessary for proteomics research. This paper …

Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization

KC Chou, HB Shen - Biochemical and biophysical research …, 2006 - Elsevier
Predicting subcellular localization of human proteins is a challenging problem, especially
when unknown query proteins do not have significant homology to proteins of known …

Esub8: a novel tool to predict protein subcellular localizations in eukaryotic organisms

Q Cui, T Jiang, B Liu, S Ma - BMC bioinformatics, 2004 - Springer
Background Subcellular localization of a new protein sequence is very important and fruitful
for understanding its function. As the number of new genomes has dramatically increased …