Non-classical protein secretion in bacteria

JD Bendtsen, L Kiemer, A Fausbøll, S Brunak - BMC microbiology, 2005 - Springer
Background We present an overview of bacterial non-classical secretion and a prediction
method for identification of proteins following signal peptide independent secretion …

PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins

Y Zhang, S Yu, R Xie, J Li, A Leier… - …, 2020 - academic.oup.com
Motivation Gram-positive bacteria have developed secretion systems to transport proteins
across their cell wall, a process that plays an important role during host infection. These …

[HTML][HTML] Bacterial proteins with cleaved or uncleaved signal peptides of the general secretory pathway

GA De Souza, NA Leversen, H Målen, HG Wiker - Journal of proteomics, 2011 - Elsevier
Correct protein compartmentalization is a key step for molecular function and cell viability,
and this is especially true for membrane and externalized proteins of bacteria. Recent …

Effective—a database of predicted secreted bacterial proteins

MA Jehl, R Arnold, T Rattei - Nucleic acids research, 2010 - academic.oup.com
Protein secretion is a key virulence mechanism of pathogenic and symbiotic bacteria, which
makes the investigation of secreted proteins ('effectors') crucial for understanding the …

Feature-based prediction of non-classical and leaderless protein secretion

JD Bendtsen, LJ Jensen, N Blom… - Protein Engineering …, 2004 - academic.oup.com
We present a sequence-based method, SecretomeP, for the prediction of mammalian
secretory proteins targeted to the non-classical secretory pathway, ie proteins without an N …

Tracking proteins secreted by bacteria: what's in the toolbox?

B Maffei, O Francetic, A Subtil - Frontiers in cellular and infection …, 2017 - frontiersin.org
Bacteria have acquired multiple systems to expose proteins on their surface, release them in
the extracellular environment or even inject them into a neighboring cell. Protein secretion …

Proteomics of Protein Secretion by Bacillus subtilis: Separating the “Secrets” of the Secretome

H Tjalsma, H Antelmann, JDH Jongbloed… - Microbiology and …, 2004 - Am Soc Microbiol
Secretory proteins perform a variety of important “remote-control” functions for bacterial
survival in the environment. The availability of complete genome sequences has allowed us …

Factors influencing recombinant protein secretion efficiency in gram-positive bacteria: signal peptide and beyond

C Peng, C Shi, X Cao, Y Li, F Liu, F Lu - Frontiers in Bioengineering …, 2019 - frontiersin.org
Signal peptides are short peptides directing newly synthesized proteins toward the secretory
pathway. These N-terminal signal sequences are ubiquitous to all prokaryotes and …

Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue

M Desvaux, M Hébraud, R Talon, IR Henderson - Trends in microbiology, 2009 - cell.com
Extracellular proteins are a subject of intense interest because of their essential roles in
bacterial lifestyles. However, several terms related to secretion are used confusingly in the …

An optimized system for expression and purification of secreted bacterial proteins

BV Geisbrecht, S Bouyain, M Pop - Protein expression and purification, 2006 - Elsevier
In this report, we describe an optimized system for the efficient overexpression, purification,
and refolding of secreted bacterial proteins. Candidate secreted proteins were produced …