Cytochrome P450 enzymes: Computational approaches to substrate prediction

A Verras, ID Kuntz, PRO de Montellano - Annual Reports in Computational …, 2006 - Elsevier
Publisher Summary This chapter discusses the P450 structural information gleaned over the
last 20 years from crystallography and homology modeling, structure-based approaches …

Designing better drugs: predicting cytochrome P450 metabolism

MJ De Groot - Drug discovery today, 2006 - Elsevier
Many 3D ligand-based and structure-based computational approaches have been used to
predict, and thus help explain, the metabolism catalyzed by the enzymes of the cytochrome …

Pharmacophore and three-dimensional quantitative structure activity relationship methods for modeling cytochrome p450 active sites

S Ekins, MJ de Groot, JP Jones - Drug metabolism and disposition, 2001 - ASPET
Structure activity relationships (SAR), three-dimensional structure activity relationships (3D-
QSAR), and pharmacophores represent useful tools in understanding cytochrome P450 …

Molecular modeling of mammalian cytochromes P450: Application of study enzyme function

GD Szklarz, SE Graham, MD Paulsen - 2000 - Elsevier
Cytochromes P450 are important heme-containing enzymes that catalyze the oxidation of a
vast array of endogenous and exogenous compounds, including drugs and carcinogens …

Progress in cytochrome P450 active site modeling

CA Kemp, JD Maréchal, MJ Sutcliffe - Archives of biochemistry and …, 2005 - Elsevier
Models capable of predicting the possible involvement of cytochromes P450 in the
metabolism of drugs or drug candidates are important tools in drug discovery and …

Use of homology modeling in conjunction with site-directed mutagenesis for analysis of structure-function relationships of mammalian cytochromes P450

GD Szklarz, JR Halpert - Life sciences, 1997 - Elsevier
In recent years, homology modeling has become an important tool to study cytochrome
P450 function, especially in conjunction with experimental approaches such as site-directed …

Virtual screening and prediction of site of metabolism for cytochrome P450 1A2 ligands

P Vasanthanathan, J Hritz, O Taboureau… - Journal of chemical …, 2009 - ACS Publications
With the availability of an increasing number of high resolution 3D structures of human
cytochrome P450 enzymes, structure-based modeling tools are more readily used. In this …

In silico methods for predicting ligand binding determinants of cytochromes P450

MJ de Groot, SB Kirton… - Frontiers in medicinal …, 2006 - ingentaconnect.com
A large number of computational methodologies have been used to predict, and thus help
explain, the metabolism catalysed by the enzymes of the cytochrome P450 superfamily …

Computational models for predicting interactions with cytochrome p450 enzyme

R Arimoto - Current topics in medicinal chemistry, 2006 - ingentaconnect.com
Cytochrome p450 (CYP) enzymes are predominantly involved in Phase 1 metabolism of
xenobiotics. As only 6 isoenzymes are responsible for∼ 90% of known oxidative drug …

In silico methods for predicting ligand binding determinants of cytochromes P450

MJ de Groot, SB Kirton… - Current topics in medicinal …, 2004 - ingentaconnect.com
A large number of computational methodologies have been used to predict, and thus help
explain, the metabolism catalysed by the enzymes of the cytochrome P450 superfamily …