Discovering microRNAs from deep sequencing data using miRDeep
The capacity of highly parallel sequencing technologies to detect small RNAs at
unprecedented depth suggests their value in systematically identifying microRNAs …
unprecedented depth suggests their value in systematically identifying microRNAs …
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
MR Friedländer, SD Mackowiak, N Li… - Nucleic acids …, 2012 - academic.oup.com
Abstract microRNAs (miRNAs) are a large class of small non-coding RNAs which post-
transcriptionally regulate the expression of a large fraction of all animal genes and are …
transcriptionally regulate the expression of a large fraction of all animal genes and are …
mirTools: microRNA profiling and discovery based on high-throughput sequencing
Abstract miRNAs are small, non-coding RNA that negatively regulate gene expression at
post-transcriptional level, which play crucial roles in various physiological and pathological …
post-transcriptional level, which play crucial roles in various physiological and pathological …
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data
A Mathelier, A Carbone - Bioinformatics, 2010 - academic.oup.com
Motivation: MicroRNAs (miRNAs) are a class of endogenes derived from a precursor (pre-
miRNA) and involved in post-transcriptional regulation. Experimental identification of novel …
miRNA) and involved in post-transcriptional regulation. Experimental identification of novel …
Identification of novel and known miRNAs in deep‐sequencing data with miRDeep2
SD Mackowiak - Current protocols in bioinformatics, 2011 - Wiley Online Library
Abstract miRNAs comprise an abundant class of small non‐coding RNAs that play important
roles in a wide range of biological processes by post‐transcriptional regulation of a large …
roles in a wide range of biological processes by post‐transcriptional regulation of a large …
[HTML][HTML] Next generation sequencing of miRNAs–strategies, resources and methods
S Motameny, S Wolters, P Nürnberg, B Schumacher - Genes, 2010 - mdpi.com
miRNAs constitute a family of small RNA species that have been demonstrated to play a
central role in regulating gene expression in many organisms. With the advent of next …
central role in regulating gene expression in many organisms. With the advent of next …
Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
L Castellano, J Stebbing - Nucleic acids research, 2013 - academic.oup.com
MicroRNAs (miRNAs) are small RNA molecules that regulate gene expression. They are
characterized by specific maturation processes defined by canonical and non-canonical …
characterized by specific maturation processes defined by canonical and non-canonical …
miRBase: annotating high confidence microRNAs using deep sequencing data
A Kozomara, S Griffiths-Jones - Nucleic acids research, 2014 - academic.oup.com
We describe an update of the miRBase database (http://www. mirbase. org/), the primary
microRNA sequence repository. The latest miRBase release (v20, June 2013) contains 24 …
microRNA sequence repository. The latest miRBase release (v20, June 2013) contains 24 …
miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data
Abstract miRDeep and its varieties are widely used to quantify known and novel micro RNA
(miRNA) from small RNA sequencing (RNAseq). This article describes miRDeep*, our …
(miRNA) from small RNA sequencing (RNAseq). This article describes miRDeep*, our …
Approaches to microRNA discovery
MicroRNAs (miRNAs) are noncoding RNAs that can regulate gene expression. Several
hundred genes encoding miRNAs have been experimentally identified in animals, and …
hundred genes encoding miRNAs have been experimentally identified in animals, and …