A practical platform for blood biomarker study by using global gene expression profiling of peripheral whole blood

Z Tian, N Palmer, P Schmid, H Yao, M Galdzicki… - PloS one, 2009 - journals.plos.org
Background Although microarray technology has become the most common method for
studying global gene expression, a plethora of technical factors across the experiment …

Comparison of globin RNA processing methods for genome-wide transcriptome analysis from whole blood

V Dumeaux, E Lund, AL Børresen-Dale - 2008 - Future Medicine
Aims: Whole blood is likely to become the prime tissue to detect biomarkers using gene
expression analyses. In this study, we assessed whether whole-blood or globin-reduced …

Gene expression profiling of whole blood: comparison of target preparation methods for accurate and reproducible microarray analysis

K Vartanian, R Slottke, T Johnstone, A Casale… - BMC genomics, 2009 - Springer
Background Peripheral blood is an accessible and informative source of transcriptomal
information for many human disease and pharmacogenomic studies. While there can be …

The effects of globin on microarray-based gene expression analysis of mouse blood

ME Winn, MA Zapala, I Hovatta, VB Risbrough… - Mammalian …, 2010 - Springer
The use of mouse blood as a model for human blood is often considered in the development
of clinically relevant, gene expression-based disease biomarkers. However, the ability to …

Optimized blood cell profiling method for genomic biomarker discovery using high-density microarray

J Shou, C Dotson, HR Qian, W Tao, C Lin… - Biomarkers, 2005 - Taylor & Francis
High-quality biomarkers for disease progression, drug efficacy and toxicity liability are
essential for improving the efficiency of drug discovery and development. The identification …

Increased sensitivity of next generation sequencing-based expression profiling after globin reduction in human blood RNA

A Mastrokolias, JT den Dunnen, GJB van Ommen… - Bmc Genomics, 2012 - Springer
Background Transcriptome analysis is of great interest in clinical research, where significant
differences between individuals can be translated into biomarkers of disease. Although next …

[HTML][HTML] A highly standardized, robust, and cost-effective method for genome-wide transcriptome analysis of peripheral blood applicable to large-scale clinical trials

S Debey, T Zander, B Brors, A Popov, R Eils… - Genomics, 2006 - Elsevier
The use of peripheral blood mononuclear cells (PBMC) for transcriptome analysis has
already been proven valuable for assessing disease-associated and drug-response-related …

The transcriptome in blood: challenges and solutions for robust expression profiling

H Fan, PS Hegde - Current molecular medicine, 2005 - ingentaconnect.com
Peripheral blood may be the most feasible tissue source in clinical assessment of
differences in gene expression between diseases and drug treatments due to accessibility …

cDNA targets improve whole blood gene expression profiling and enhance detection of pharmocodynamic biomarkers: a quantitative platform analysis

ML Parrish, C Wright, Y Rivers, D Argilla… - Journal of translational …, 2010 - Springer
Background Genome-wide gene expression profiling of whole blood is an attractive method
for discovery of biomarkers due to its non-invasiveness, simple clinical site processing and …

Variation in RNA-Seq transcriptome profiles of peripheral whole blood from healthy individuals with and without globin depletion

H Shin, CP Shannon, N Fishbane, J Ruan, M Zhou… - PloS one, 2014 - journals.plos.org
Background The molecular profile of circulating blood can reflect physiological and
pathological events occurring in other tissues and organs of the body and delivers a …