Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryzaand their phylogenetic utility across various taxonomic levels
Background Although the overwhelming majority of genes found in angiosperms are
members of gene families, and both gene-and genome-duplication are pervasive forces in …
members of gene families, and both gene-and genome-duplication are pervasive forces in …
Use of nuclear genes for phylogeny reconstruction in plants
Molecular data have had a profound impact on the field of plant systematics, and the
application of DNA-sequence data to phylogenetic problems is now routine. The majority of …
application of DNA-sequence data to phylogenetic problems is now routine. The majority of …
Utility of low-copy nuclear gene sequences in plant phylogenetics
T Sang - Critical reviews in Biochemistry and molecular biology, 2002 - Taylor & Francis
Low-copy nuclear genes in plants are a rich source of phylogenetic information. They hold a
great potential to improve the robustness of phylogenetic reconstruction at all taxonomic …
great potential to improve the robustness of phylogenetic reconstruction at all taxonomic …
Reprint of: using nuclear gene data for plant phylogenetics: progress and prospects
The paper reviews the current state of low and single copy nuclear markers that have been
applied successfully in plant phylogenetics to date, and discusses case studies highlighting …
applied successfully in plant phylogenetics to date, and discusses case studies highlighting …
The continuing search: low-copy nuclear sequences for lower-level plant molecular phylogenetic studies
ME Mort, DJ Crawford - Taxon, 2004 - JSTOR
A recent survey by Alvarez & Wendel (2003) revealed that during a five-year period over
65% of all molecular phylogenetic studies of plants at the generic level or lower included …
65% of all molecular phylogenetic studies of plants at the generic level or lower included …
Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …
Single-copy genes as molecular markers for phylogenomic studies in seed plants
Phylogenetic relationships among seed plant taxa, especially within the gymnosperms,
remain contested. In contrast to angiosperms, for which several genomic, transcriptomic and …
remain contested. In contrast to angiosperms, for which several genomic, transcriptomic and …
Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a …
F Wu, LA Mueller, D Crouzillat, V Pétiard… - Genetics, 2006 - academic.oup.com
We report herein the application of a set of algorithms to identify a large number (2869) of
single-copy orthologs (COSII), which are shared by most, if not all, euasterid plant species …
single-copy orthologs (COSII), which are shared by most, if not all, euasterid plant species …
How many genes are there in plants (… and why are they there)?
Annotation of the first few complete plant genomes has revealed that plants have many
genes. For Arabidopsis, over 26500 gene loci have been predicted, whereas for rice, the …
genes. For Arabidopsis, over 26500 gene loci have been predicted, whereas for rice, the …
The evolution of nuclear genome structure in seed plants
EA Kellogg, JL Bennetzen - American journal of botany, 2004 - Wiley Online Library
Plant nuclear genomes exhibit extensive structural variation in size, chromosome number,
number and arrangement of genes, and number of genome copies per nucleus. This …
number and arrangement of genes, and number of genome copies per nucleus. This …