Exploring the shallow end; estimating information content in transcriptomics studies

DJ Kliebenstein - Frontiers in plant science, 2012 - frontiersin.org
Transcriptomics is a major platform to study organismal biology. The advent of new parallel
sequencing technologies has opened up a new avenue of transcriptomics with ever deeper …

Mapping of QTLs underlying flowering time in sorghum [Sorghum bicolor (L.) Moench]

Y El Mannai, T Shehzad, K Okuno - Breeding science, 2012 - jstage.jst.go.jp
Due to its critical importance in crop yield, the photoperiodic regulation of flowering time is
considered an important trait in sorghum breeding programs. In this study, quantitative trait …

Development of pachytene FISH maps for six maize chromosomes and their integration with other maize maps for insights into genome structure variation

DM Figueroa, HW Bass - Chromosome research, 2012 - Springer
Integrated cytogenetic pachytene fluorescence in situ hybridization (FISH) maps were
developed for chromosomes 1, 3, 4, 5, 6, and 8 of maize using restriction fragment length …

Nonparametric method for genomics-based prediction of performance of quantitative traits involving epistasis in plant breeding

X Sun, P Ma, RH Mumm - PLoS One, 2012 - journals.plos.org
Genomic selection (GS) procedures have proven useful in estimating breeding value and
predicting phenotype with genome-wide molecular marker information. However, issues of …

Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study …

M Truntzler, N Ranc, MC Sawkins, S Nicolas… - Theoretical and Applied …, 2012 - Springer
Recent progress in genotyping and resequencing techniques have opened new
opportunities for deciphering quantitative trait variation by looking for associations between …

SNP Discovery with EST and NextGen Sequencing in Switchgrass (Panicum virgatum L.)

ES Ersoz, MH Wright, JL Pangilinan, MJ Sheehan… - 2012 - journals.plos.org
Although yield trials for switchgrass (Panicum virgatum L.), a potentially high value biofuel
feedstock crop, are currently underway throughout North America, the genetic tools for crop …

[PDF][PDF] Chapter New Opportunities in Metabolomics and Biochemical Phenotyping for Plant Systems Biology

G Yves, R Dominique, D Catherine, B Stphane… - 2012 - library.oapen.org
Today's unsustainable use of fossil fuel reserves or green fuel is predicted to destabilize the
global climate and lead to reduced food security. The key challenge for the coming decades …

Sequencing technologies and their use in plant biotechnology and breeding

V Llaca - DNA Sequencing—Methods and Applications, 2012 - books.google.com
The development of DNA sequencing strategies has been a high priority in genetics
research since the discovery of the structure of DNA and the basic molecular mechanisms of …

Genetic variation for morphology and maturity among the half‐sib progeny of nine orchardgrass germplasm populations

JG Robins, B Shaun Bushman, KB Jensen… - Crop …, 2012 - Wiley Online Library
Orchardgrass (Dactylis glomerata L.) acreage has declined compared to perennial ryegrass
(Lolium perenne L.) and tall fescue (Festuca arundinacea Schreb.). With the intent of …

[PDF][PDF] Marker-assisted breeding in crops

R Tuberosa - Encyclopedia of sustainability science and …, 2012 - researchgate.net
Backcross Procedure used by plant breeders to introgress an allele at a locus of interest (eg,
disease resistance) from a donor parent to a recurrent parent, usually a successful cultivar …