Differential gene expression in HIV-infected individuals following ART

M Massanella, A Singhania, N Beliakova-Bethell… - Antiviral research, 2013 - Elsevier
Previous studies of the effect of ART on gene expression in HIV-infected individuals have
identified small numbers of modulated genes. Since these studies were underpowered or …

[HTML][HTML] Genome-wide analysis of primary peripheral blood mononuclear cells from HIV+ patients-pre-and post-HAART show immune activation and inflammation the …

VN da Conceicao, WB Dyer, K Gandhi, P Gupta… - Molecular and cellular …, 2014 - Springer
Background Although the host gene expression in the context of HIV has been explored by
several studies, it remains unclear how HIV is able to manipulate and subvert host gene …

Antiretroviral therapy concentrations differ in gut vs. lymph node tissues and are associated with HIV viral transcription by a novel RT-ddPCR assay

SA Lee, S Telwatte, H Hatano… - JAIDS Journal of …, 2020 - journals.lww.com
Background: Most HIV-infected cells during antiretroviral therapy (ART) persist in lymphoid
tissues. Studies disagree on whether suboptimal tissue ART concentrations contribute to …

[HTML][HTML] Identification of genes whose expression profile is associated with non-progression towards AIDS using eQTLs

JL Spadoni, P Rucart, S Le Clerc, D van Manen… - PLoS …, 2015 - journals.plos.org
Background Many genome-wide association studies have been performed on progression
towards the acquired immune deficiency syndrome (AIDS) and they mainly identified …

Antiretroviral therapy down-regulates innate antiviral response genes in patients with AIDS in sub-saharan Africa

DR Boulware, DB Meya, TL Bergemann… - JAIDS Journal of …, 2010 - journals.lww.com
Objective: HIV pathogenesis is characterized by destructive imbalances between virus-
mediated immune damage, antiviral immune responses, and immune activation. We …

[HTML][HTML] Adaptation of droplet digital PCR-based HIV transcription profiling to digital PCR and association of HIV transcription and total or intact HIV DNA

C Tumpach, A Rhodes, Y Kim, J Ong, H Liu, D Chibo… - Viruses, 2023 - mdpi.com
In most people living with HIV (PLWH) on effective antiretroviral therapy (ART), cell-
associated viral transcripts are readily detectable in CD4+ T cells despite the absence of …

[HTML][HTML] Transcriptional profiles in CD8+ T cells from HIV+ progressors on HAART are characterized by coordinated up-regulation of oxidative phosphorylation …

JQ Wu, DE Dwyer, WB Dyer, YH Yang, B Wang… - Virology, 2008 - Elsevier
The functional impairment and numerical decline of CD8+ T cells during HIV infection has a
profound effect on disease progression, but only limited microarray studies have used CD8+ …

influence of ART on HIV genetics

FR Simonetti, MF Kearney - Current Opinion in HIV and AIDS, 2015 - journals.lww.com
Plasma HIV RNA shows no evidence for evolution during ART, suggesting that HIV
persistence is not driven by low-level, ongoing replication. The emergence of identical viral …

[HTML][HTML] Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency

S Telwatte, S Morón-López, D Aran, P Kim, C Hsieh… - Retrovirology, 2019 - Springer
Background HIV-infected cell lines are widely used to study latent HIV infection, which is
considered the main barrier to HIV cure. We hypothesized that these cell lines differ from …

HIV-1 transcriptional activity during frequent longitudinal sampling in aviremic patients on antiretroviral therapy

S Leth, R Nymann, S Jørgensen, R Olesen… - Aids, 2016 - journals.lww.com
Background: HIV-1 transcription during suppressive antiretroviral therapy (ART) is not well
understood. This is problematic as latency-reactivating agent-based HIV-1 eradication trials …