Sample preparation methods for quantitative detection of DNA by molecular assays and marine biosensors

AM Cox, KD Goodwin - Marine pollution bulletin, 2013 - Elsevier
The need for quantitative molecular methods is growing in environmental, food, and medical
fields but is hindered by low and variable DNA extraction and by co-extraction of PCR …

The next-generation PCR-based quantification method for ambient waters: digital PCR

Y Cao, JF Griffith, SB Weisberg - Marine genomics: methods and protocols, 2016 - Springer
Real-time quantitative PCR (qPCR) is increasingly being used for ambient water monitoring,
but development of digital polymerase chain reaction (digital PCR) has the potential to …

Generic qPCR assays for quality control in environmental DNA research

X Zhu, KL Bell, ML Rourke, H Wu… - Environmental …, 2024 - Wiley Online Library
Environmental DNA (eDNA) has been widely used for species surveillance. However, the
lack of adequate quality control in many eDNA research projects and applications can lead …

The need for robust qPCR‐based eDNA detection assays in environmental monitoring and species inventories

VS Langlois, MJ Allison, LC Bergman, TA To… - Environmental …, 2021 - Wiley Online Library
Considerable promise and excitement exist in the application of environmental DNA (eDNA)
methods to environmental monitoring and species inventories as eDNA can provide cost …

Molecular quantification of environmental DNA using microfluidics and digital PCR

T Hoshino, F Inagaki - Systematic and Applied Microbiology, 2012 - Elsevier
Real-time PCR has been widely used to evaluate gene abundance in natural microbial
habitats. However, PCR-inhibitory substances often reduce the efficiency of PCR, leading to …

The effect of dilution and the use of a post-extraction nucleic acid purification column on the accuracy, precision, and inhibition of environmental DNA samples

AM McKee, SF Spear, TW Pierson - Biological Conservation, 2015 - Elsevier
Isolation of environmental DNA (eDNA) is an increasingly common method for detecting
presence and assessing relative abundance of rare or elusive species in aquatic systems …

Reporting the limits of detection and quantification for environmental DNA assays

KE Klymus, CM Merkes, MJ Allison… - Environmental …, 2020 - Wiley Online Library
Abstract Background Environmental DNA (eDNA) analysis is increasingly being used to
detect the presence and relative abundance of rare species, especially invasive or imperiled …

Effects of preservation strategies on environmental DNA detection and quantification using ddPCR

Q Mauvisseau, D Halfmaerten, S Neyrinck… - Environmental …, 2021 - Wiley Online Library
Molecular‐based monitoring relying on environmental DNA (eDNA) detection became
routinely used around the world in the last few years, especially in aquatic environments …

Moving environmental DNA (eDNA) technologies from benchtop to the field using passive sampling and PDQeX extraction

GJ Jeunen, U von Ammon, H Cross… - Environmental …, 2022 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has shown great promise as an effective, non‐
invasive monitoring method for marine biomes. However, long filtration times and the need …

[HTML][HTML] The ultimate qPCR experiment: producing publication quality, reproducible data the first time

SC Taylor, K Nadeau, M Abbasi, C Lachance… - Trends in …, 2019 - cell.com
Quantitative PCR (qPCR) is one of the most common techniques for quantification of nucleic
acid molecules in biological and environmental samples. Although the methodology is …