Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks

Q Fei, R Xia, BC Meyers - The Plant Cell, 2013 - academic.oup.com
Plant genomes are the source of large numbers of small RNAs, generated via a variety of
genetically separable pathways. Several of these pathways converge in the production of …

Biogenesis and regulatory hierarchy of phased small interfering RNAs in plants

P Deng, S Muhammad, M Cao… - Plant biotechnology …, 2018 - Wiley Online Library
Several varieties of small RNAs including microRNAs (miRNAs) and small interfering RNAs
(siRNAs) are generated in plants to regulate development, genome stability and response to …

MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA biogenesis in eudicots

R Xia, BC Meyers, Z Liu, EP Beers, S Ye, Z Liu - The Plant Cell, 2013 - academic.oup.com
Trans-acting small interfering RNAs (tasiRNAs) are a major class of small RNAs performing
essential biological functions in plants. The first reported tasiRNA pathway, that of miR173 …

Biogenesis of diverse plant phasiRNAs involves an miRNA-trigger and Dicer-processing

R Komiya - Journal of plant research, 2017 - Springer
It has been almost 30 years since RNA interference (RNAi) was shown to silence genes via
double-stranded RNAs (dsRNAs) in Caenorhabditis elegans (Fire et al. 1998). 20–30 …

PhasiRNAs in plants: their biogenesis, genic sources, and roles in stress responses, development, and reproduction

Y Liu, C Teng, R Xia, BC Meyers - Plant Cell, 2020 - academic.oup.com
Phased secondary small interfering RNAs (phasiRNAs) constitute a major category of small
RNAs in plants, but most of their functions are still poorly defined. Some phasiRNAs, known …

Identification of trans‐acting siRNAs in moss and an RNA‐dependent RNA polymerase required for their biogenesis

M Talmor‐Neiman, R Stav, L Klipcan… - The Plant …, 2006 - Wiley Online Library
Trans‐acting small interfering RNAs (tasiRNAs) are a class of higher‐plant endogenous
siRNAs that, like miRNAs, direct the cleavage of non‐identical transcripts. tasiRNAs derive …

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs

F Vazquez, H Vaucheret, R Rajagopalan, C Lepers… - Molecular cell, 2004 - cell.com
Here we describe a set of endogenous short interfering RNAs (siRNAs) in Arabidopsis,
some of which direct the cleavage of endogenous mRNAs. These siRNAs correspond to …

Functions of microRNAs and related small RNAs in plants

AC Mallory, H Vaucheret - Nature genetics, 2006 - nature.com
MicroRNAs (miRNAs) and short interfering RNAs (siRNAs), 20-to 27-nt in length, are
essential regulatory molecules that act as sequence-specific guides in several processes in …

Small RNAs add zing to the zig-zag-zig model of plant defenses

Q Fei, Y Zhang, R Xia… - Molecular Plant-Microbe …, 2016 - Am Phytopath Society
Plant small RNAs play important roles in transcriptional and posttranscriptional regulation,
with ongoing work demonstrating their functions in diverse pathways. Their roles in defense …

An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes

S Arikit, R Xia, A Kakrana, K Huang, J Zhai, Z Yan… - The Plant …, 2014 - academic.oup.com
Small RNAs are ubiquitous, versatile repressors and include (1) microRNAs (miRNAs),
processed from mRNA forming stem-loops; and (2) small interfering RNAs (siRNAs), the …