Reprint of: using nuclear gene data for plant phylogenetics: progress and prospects

EA Zimmer, J Wen - Molecular Phylogenetics and Evolution, 2013 - Elsevier
The paper reviews the current state of low and single copy nuclear markers that have been
applied successfully in plant phylogenetics to date, and discusses case studies highlighting …

Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches

EA Zimmer, J Wen - Journal of Systematics and Evolution, 2015 - Wiley Online Library
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …

Utility of low-copy nuclear gene sequences in plant phylogenetics

T Sang - Critical reviews in Biochemistry and molecular biology, 2002 - Taylor & Francis
Low-copy nuclear genes in plants are a rich source of phylogenetic information. They hold a
great potential to improve the robustness of phylogenetic reconstruction at all taxonomic …

Use of nuclear genes for phylogeny reconstruction in plants

RL Small, RC Cronn, JF Wendel - Australian Systematic Botany, 2004 - CSIRO Publishing
Molecular data have had a profound impact on the field of plant systematics, and the
application of DNA-sequence data to phylogenetic problems is now routine. The majority of …

The continuing search: low-copy nuclear sequences for lower-level plant molecular phylogenetic studies

ME Mort, DJ Crawford - Taxon, 2004 - JSTOR
A recent survey by Alvarez & Wendel (2003) revealed that during a five-year period over
65% of all molecular phylogenetic studies of plants at the generic level or lower included …

Nuclear DNA‐based markers for plant evolutionary biology

AE Strand, J Leebens‐Mack, BG Milligan - Molecular ecology, 1997 - Wiley Online Library
While DNA‐based markers can provide a wealth of information for the study of plant
evolutionary biology, progress is limited by the lack of primers available for PCR. To …

[HTML][HTML] Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryzaand their phylogenetic utility across various taxonomic levels

JM Duarte, PK Wall, PP Edger, LL Landherr… - BMC evolutionary …, 2010 - Springer
Background Although the overwhelming majority of genes found in angiosperms are
members of gene families, and both gene-and genome-duplication are pervasive forces in …

From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction

CE Hughes, RJ Eastwood… - … Transactions of the …, 2006 - royalsocietypublishing.org
Phylogenetic analyses of DNA sequences have prompted spectacular progress in
assembling the Tree of Life. However, progress in constructing phylogenies among closely …

The potential of genomics in plant systematics

DE Soltis, MA Gitzendanner, G Stull, M Chester… - Taxon, 2013 - Wiley Online Library
Next‐generation sequencing (NGS) has revolutionized molecular systematics as well as
population and conservation genetics. It is now possible to obtain enormous amounts of …

The evolution of nuclear genome structure in seed plants

EA Kellogg, JL Bennetzen - American journal of botany, 2004 - Wiley Online Library
Plant nuclear genomes exhibit extensive structural variation in size, chromosome number,
number and arrangement of genes, and number of genome copies per nucleus. This …