What the X Has to Do with It: Differences in Regulatory Variability between the Sexes in Drosophila simulans

RM Graze, LM McIntyre, AM Morse… - Genome Biology and …, 2014 - academic.oup.com
The mechanistic basis of regulatory variation and the prevailing evolutionary forces shaping
that variation are known to differ between sexes and between chromosomes. Regulatory …

Interrogation of allelic chromatin states in human cells by high-density ChIP-genotyping

N Light, V Adoue, B Ge, SH Chen, T Kwan… - Epigenetics, 2014 - Taylor & Francis
Allele-specific (AS) assessment of chromatin has the potential to elucidate specific cis-
regulatory mechanisms, which are predicted to underlie the majority of the known genetic …

Inference of allele-specific expression from RNA-seq data

PK Korir, C Seoighe - Plant Epigenetics and Epigenomics: Methods and …, 2014 - Springer
The differential abundance of transcripts from alternative alleles of a gene, for example in a
hybrid plant or an outbred natural population, can provide information about the nature of …

Computational modeling of drug response with applications to neuroscience

R Herwig - Dialogues in clinical neuroscience, 2014 - Taylor & Francis
The development of novel high-throughput technologies has opened up the opportunity to
deeply characterize patient tissues at various molecular levels and has given rise to a …

Cancer transcriptome sequencing and analysis

RD Morin, SB Montgomery - Cancer Genomics, 2014 - Elsevier
Identifying gene expression changes in cancer provides opportunities to identify biomarkers
that can be informative in regard to risk and in the choice of treatment options. In recent …

[图书][B] Computational approaches for the study of gene expression, genetic and epigenetic variation in human

J Wagner - 2014 - search.proquest.com
Advances in high-throughput genomic technology seen in recent years have enabled the
measurement of gene expression, DNA sequence polymorphisms, and epigenetic marks …

Are all genetic variants in DNase I sensitivity regions functional?

GA Moyerbrailean, CT Harvey, CA Kalita, X Wen… - bioRxiv, 2014 - biorxiv.org
A detailed mechanistic understanding of the direct functional consequences of DNA
variation on gene regulatory mechanism is critical for a complete understanding of complex …

[PDF][PDF] Allele-Specific Expression, a New Genomics Tool for Development of Value-Added SNP chips and to Fine Map QTL. In

WM Muir, S Perumbakkam… - 10th World Congress …, 2014 - researchgate.net
A new tool emerging to fine map QTL associated with treatments or conditions, such as
disease, is allele-specific expression (ASE). We used allele-specific expression (ASE) to find …

Molecular and Biological Mechanisms of the ARAP1 Type 2 Diabetes Locus

J Kulzer - 2014 - cdr.lib.unc.edu
Genome-wide association studies (GWAS) have identified more than 70 loci associated with
type 2 diabetes (T2D), but for most, the underlying causal variants, associated genes, and …

Leveraging RNA-Seq to detect novel protein variations via mass spectrometry

GM Sheynkman - 2014 - search.proquest.com
Current practice in mass spectrometry-based proteomics is to identify peptides by
comparison of experimental spectra with theoretical spectra derived from a reference protein …