[HTML][HTML] A SUPER powerful method for genome wide association study

Q Wang, F Tian, Y Pan, ES Buckler, Z Zhang - PloS one, 2014 - journals.plos.org
Genome-Wide Association Studies shed light on the identification of genes underlying
human diseases and agriculturally important traits. This potential has been shadowed by …

[HTML][HTML] Enrichment of statistical power for genome-wide association studies

M Li, X Liu, P Bradbury, J Yu, YM Zhang, RJ Todhunter… - BMC biology, 2014 - Springer
Background The inheritance of most human diseases and agriculturally important traits is
controlled by many genes with small effects. Identifying these genes, while simultaneously …

[HTML][HTML] Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology

SB Wang, JY Feng, WL Ren, B Huang, L Zhou… - Scientific reports, 2016 - nature.com
Genome-wide association studies (GWAS) have been widely used in genetic dissection of
complex traits. However, common methods are all based on a fixed-SNP-effect mixed linear …

SNPassoc: an R package to perform whole genome association studies

JR González, L Armengol, X Solé, E Guinó… - …, 2007 - academic.oup.com
The popularization of large-scale genotyping projects has led to the widespread adoption of
genetic association studies as the tool of choice in the search for single nucleotide …

mrMLM v4. 0.2: an R platform for multi-locus genome-wide association studies

YW Zhang, CL Tamba, YJ Wen, P Li… - Genomics …, 2020 - academic.oup.com
Previous studies have reported that some important loci are missed in single-locus genome-
wide association studies (GWAS), especially because of the large phenotypic error in field …

A generalized linear mixed model association tool for biobank-scale data

L Jiang, Z Zheng, H Fang, J Yang - Nature genetics, 2021 - nature.com
Compared with linear mixed model-based genome-wide association (GWA) methods,
generalized linear mixed model (GLMM)-based methods have better statistical properties …

A fast mrMLM algorithm for multi-locus genome-wide association studies

CL Tamba, YM Zhang - biorxiv, 2018 - biorxiv.org
Background Recent developments in technology result in the generation of big data. In
genome-wide association studies (GWAS), we can get tens of million SNPs that need to be …

[HTML][HTML] Comparison of methods to account for relatedness in genome-wide association studies with family-based data

J Eu-Ahsunthornwattana, EN Miller, M Fakiola… - PLoS …, 2014 - journals.plos.org
Approaches based on linear mixed models (LMMs) have recently gained popularity for
modelling population substructure and relatedness in genome-wide association studies. In …

A variable selection method for genome-wide association studies

Q He, DY Lin - Bioinformatics, 2011 - academic.oup.com
Motivation: Genome-wide association studies (GWAS) involving half a million or more single
nucleotide polymorphisms (SNPs) allow genetic dissection of complex diseases in a holistic …

Improved linear mixed models for genome-wide association studies

J Listgarten, C Lippert, CM Kadie, RI Davidson… - Nature …, 2012 - nature.com
Methods) that includes family members and non-Caucasians, FaST-LMM-Select yielded
slightly less inflation, fewer false positives and fewer false negatives (due to lack of dilution) …