An online copy number variant detection method for short sequencing reads
A Yiğiter, J Chen, L An… - Journal of Applied Statistics, 2015 - Taylor & Francis
The availability of the next generation sequencing (NGS) technology in today's biomedical
research has provided new opportunities in scientific discovery of genetic information. The …
research has provided new opportunities in scientific discovery of genetic information. The …
Modeling the next generation sequencing read count data for DNA copy number variant study
As one of the most recent advanced technologies developed for biomedical research, the
next generation sequencing (NGS) technology has opened more opportunities for scientific …
next generation sequencing (NGS) technology has opened more opportunities for scientific …
SeqBBS: a change-point model based algorithm and R package for searching CNV regions via the ratio of sequencing reads
H Li, J Vallandingham, J Chen - 2013 IEEE International …, 2013 - ieeexplore.ieee.org
Following the breakthrough of the microarray technology, the next generation sequencing
(NGS) technology further advanced approaches in modern biomedical research. The high …
(NGS) technology further advanced approaches in modern biomedical research. The high …
Statistical models for DNA copy number variation detection using read‐depth data from next generation sequencing experiments
Summary In this 'Big Data'era, statisticians inevitably encounter data generated from various
disciplines. In particular, advances in bio‐technology have enabled scientists to produce …
disciplines. In particular, advances in bio‐technology have enabled scientists to produce …
A penalized regression approach for DNA copy number study using the sequencing data
J Lee, J Chen - Statistical Applications in Genetics and Molecular …, 2019 - degruyter.com
Modeling the high-throughput next generation sequencing (NGS) data, resulting from
experiments with the goal of profiling tumor and control samples for the study of DNA copy …
experiments with the goal of profiling tumor and control samples for the study of DNA copy …
Combinatorial detection algorithm for copy number variations using high-throughput sequencing reads
H Yang, D Zhu - International Journal of Pattern Recognition and …, 2019 - World Scientific
Copy number variation (CNV) is a prevalent kind of genetic structural variation which leads
to an abnormal number of copies of large genomic regions, such as gain or loss of DNA …
to an abnormal number of copies of large genomic regions, such as gain or loss of DNA …
Detection of copy number variation from next generation sequencing data with total variation penalized least square optimization
The detection of copy number variation is important to understand complex diseases such
as autism, schizophrenia, cancer, etc. In this paper we propose a method to detect copy …
as autism, schizophrenia, cancer, etc. In this paper we propose a method to detect copy …
[HTML][HTML] The screening and ranking algorithm for change-points detection in multiple samples
C Song, X Min, H Zhang - The annals of applied statistics, 2016 - ncbi.nlm.nih.gov
The chromosome copy number variation (CNV) is the deviation of genomic regions from
their normal copy number states, which may associate with many human diseases. Current …
their normal copy number states, which may associate with many human diseases. Current …
A backward procedure for change‐point detection with applications to copy number variation detection
S Jun Shin, Y Wu, N Hao - Canadian Journal of Statistics, 2020 - Wiley Online Library
Change‐point detection regains much attention recently for analyzing array or sequencing
data for copy number variation (CNV) detection. In such applications, the true signals are …
data for copy number variation (CNV) detection. In such applications, the true signals are …
Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion
R Xi, AG Hadjipanayis, LJ Luquette… - Proceedings of the …, 2011 - National Acad Sciences
DNA copy number variations (CNVs) play an important role in the pathogenesis and
progression of cancer and confer susceptibility to a variety of human disorders. Array …
progression of cancer and confer susceptibility to a variety of human disorders. Array …