A new FST‐based method to uncover local adaptation using environmental variables

P De Villemereuil, OE Gaggiotti - Methods in Ecology and …, 2015 - Wiley Online Library
Genome‐scan methods are used for screening genomewide patterns of DNA polymorphism
to detect signatures of positive selection. There are two main types of methods:(i)'outlier' …

The search for loci under selection: trends, biases and progress

CW Ahrens, PD Rymer, A Stow, J Bragg… - Molecular …, 2018 - Wiley Online Library
Detecting genetic variants under selection using FST outlier analysis (OA) and
environmental association analyses (EAAs) are popular approaches that provide insight into …

Controlling false discoveries in genome scans for selection

O François, H Martins, K Caye… - Molecular ecology, 2016 - Wiley Online Library
Population differentiation (PD) and ecological association (EA) tests have recently emerged
as prominent statistical methods to investigate signatures of local adaptation using …

Identifying adaptive genetic divergence among populations from genome scans

MA Beaumont, DJ Balding - Molecular ecology, 2004 - Wiley Online Library
The identification of signatures of natural selection in genomic surveys has become an area
of intense research, stimulated by the increasing ease with which genetic markers can be …

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

S De Mita, AC Thuillet, L Gay, N Ahmadi… - Molecular …, 2013 - Wiley Online Library
Thanks to genome‐scale diversity data, present‐day studies can provide a detailed view of
how natural and cultivated species adapt to their environment and particularly to …

The coupling hypothesis: why genome scans may fail to map local adaptation genes

N Bierne, J Welch, E Loire, F Bonhomme… - Molecular …, 2011 - Wiley Online Library
Genomic scans of multiple populations often reveal marker loci with greatly increased
differentiation between populations. Often this differentiation coincides in space with …

Using environmental correlations to identify loci underlying local adaptation

G Coop, D Witonsky, A Di Rienzo, JK Pritchard - Genetics, 2010 - academic.oup.com
Loci involved in local adaptation can potentially be identified by an unusual correlation
between allele frequencies and important ecological variables or by extreme allele …

Identifying outlier loci in admixed and in continuous populations using ancestral population differentiation statistics

H Martins, K Caye, K Luu, MGB Blum… - Molecular …, 2016 - Wiley Online Library
Finding genetic signatures of local adaptation is of great interest for many population genetic
studies. Common approaches to sorting selective loci from their genomic background focus …

Genome scans for detecting footprints of local adaptation using a Bayesian factor model

N Duforet-Frebourg, E Bazin… - Molecular biology and …, 2014 - academic.oup.com
There is a considerable impetus in population genomics to pinpoint loci involved in local
adaptation. A powerful approach to find genomic regions subject to local adaptation is to …

Robust identification of local adaptation from allele frequencies

T Günther, G Coop - Genetics, 2013 - academic.oup.com
Comparing allele frequencies among populations that differ in environment has long been a
tool for detecting loci involved in local adaptation. However, such analyses are complicated …