Fungal identification biases in microbiome projects
L Tedersoo, B Lindahl - Environmental microbiology reports, 2016 - Wiley Online Library
Fungi are the key players in ecosystems as well as in plant and human health. High‐
throughput molecular identification of fungi has greatly progressed our understanding about …
throughput molecular identification of fungi has greatly progressed our understanding about …
Identifying the 'unidentified'fungi: a global-scale long-read third-generation sequencing approach
Molecular identification methods, in particular high-throughput sequencing tools, have
greatly improved our knowledge about fungal diversity and biogeography, but many of the …
greatly improved our knowledge about fungal diversity and biogeography, but many of the …
Back to the future: natural history and the way forward in modern fungal ecology
KG Peay - Fungal Ecology, 2014 - Elsevier
The growing power and increasing availability of molecular tools for identifying fungi in
environmental samples has revolutionized the way that fungal ecologists work. As a result …
environmental samples has revolutionized the way that fungal ecologists work. As a result …
Different amplicon targets for sequencing-based studies of fungal diversity
Target-gene amplicon sequencing is the most exploited high-throughput sequencing
application in microbial ecology. The targets are taxonomically relevant genes, with 16S …
application in microbial ecology. The targets are taxonomically relevant genes, with 16S …
[HTML][HTML] Critical issues in mycobiota analysis
B Halwachs, N Madhusudhan, R Krause… - Frontiers in …, 2017 - frontiersin.org
Fungi constitute an important part of the human microbiota and they play a significant role for
health and disease development. Advancements made in the culture-independent analysis …
health and disease development. Advancements made in the culture-independent analysis …
Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
Background Fungi play critical roles in many ecosystems, cause serious diseases in plants
and animals, and pose significant threats to human health and structural integrity problems …
and animals, and pose significant threats to human health and structural integrity problems …
Molecular techniques for pathogen identification and fungus detection in the environment
Many species of fungi can cause disease in plants, animals and humans. Accurate and
robust detection and quantification of fungi is essential for diagnosis, modeling and …
robust detection and quantification of fungi is essential for diagnosis, modeling and …
Accurate estimation of fungal diversity and abundance through improved lineage-specific primers optimized for Illumina amplicon sequencing
While high-throughput sequencing methods are revolutionizing fungal ecology, recovering
accurate estimates of species richness and abundance has proven elusive. We sought to …
accurate estimates of species richness and abundance has proven elusive. We sought to …
Sequence-based classification and identification of Fungi
Fungal taxonomy and ecology have been revolutionized by the application of molecular
methods and both have increasing connections to genomics and functional biology …
methods and both have increasing connections to genomics and functional biology …
Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …