Bayesian identification of bacterial strains from sequencing data
A Sankar, B Malone, SC Bayliss… - Microbial …, 2016 - microbiologyresearch.org
Rapidly assaying the diversity of a bacterial species present in a sample obtained from a
hospital patient or an environmental source has become possible after recent technological …
hospital patient or an environmental source has become possible after recent technological …
[HTML][HTML] Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods
Background Recent developments in sequencing technologies make it possible to obtain
genome sequences from a large number of isolates in a very short time. Bayesian …
genome sequences from a large number of isolates in a very short time. Bayesian …
Inferences from whole-genome sequences of bacterial pathogens
TS Whittam, AC Bumbaugh - Current opinion in genetics & development, 2002 - Elsevier
Genomic sequencing of bacterial pathogens has recently moved from the study of distantly
related organisms to within-species comparisons of multiple strains. Strains often differ in …
related organisms to within-species comparisons of multiple strains. Strains often differ in …
Bacterial population genomics and infectious disease diagnostics
New sequencing technologies have made the production of bacterial genome sequences
increasingly easy, and it can be confidently forecasted that vast genomic databases will be …
increasingly easy, and it can be confidently forecasted that vast genomic databases will be …
Computational analyses of bacterial strains from shotgun reads
Shotgun sequencing is routinely employed to study bacteria in microbial communities. With
the vast amount of shotgun sequencing reads generated in a metagenomic project, it is …
the vast amount of shotgun sequencing reads generated in a metagenomic project, it is …
mixtureS: a novel tool for bacterial strain genome reconstruction from reads
Motivation It is essential to study bacterial strains in environmental samples. Existing
methods and tools often depend on known strains or known variations, cannot work on …
methods and tools often depend on known strains or known variations, cannot work on …
Pathoscope: species identification and strain attribution with unassembled sequencing data
Emerging next-generation sequencing technologies have revolutionized the collection of
genomic data for applications in bioforensics, biosurveillance, and for use in clinical settings …
genomic data for applications in bioforensics, biosurveillance, and for use in clinical settings …
[HTML][HTML] Bacterial epidemiology and biology-lessons from genome sequencing
J Parkhill, BW Wren - Genome biology, 2011 - Springer
Bacterial epidemiology and biology - lessons from genome sequencing | Genome Biology
Skip to main content SpringerLink Account Menu Find a journal Publish with us Track your …
Skip to main content SpringerLink Account Menu Find a journal Publish with us Track your …
[HTML][HTML] Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering
Background Recently there has been an explosion in the availability of bacterial genomic
sequences, making possible now an analysis of genomic signatures across more than 800 …
sequences, making possible now an analysis of genomic signatures across more than 800 …
Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier
R Sandberg, G Winberg, CI Bränden, A Kaske… - Genome …, 2001 - genome.cshlp.org
Bacterial genomes have diverged during evolution, resulting in clearcut differences in their
nucleotide composition, such as their GC content. The analysis of complete sequences of …
nucleotide composition, such as their GC content. The analysis of complete sequences of …