Polyploidy and the proteome

DE Soltis, BB Misra, S Shan, S Chen… - Biochimica et Biophysica …, 2016 - Elsevier
Although major advances have been made during the past 20 years in our understanding of
the genetic and genomic consequences of polyploidy, our knowledge of polyploidy and the …

Polyploidy: pitfalls and paths to a paradigm

DE Soltis, CJ Visger, DB Marchant… - American journal of …, 2016 - Wiley Online Library
Investigators have long searched for a polyploidy paradigm—rules or principles that might
be common following polyploidization (whole‐genome duplication, WGD). Here we attempt …

Methods for genome-wide analysis of gene expression changes in polyploids

J Wang, JJ Lee, L Tian, HS Lee, M Chen, S Rao… - Methods in …, 2005 - Elsevier
Polyploidy is an evolutionary innovation, providing extra sets of genetic material for
phenotypic variation and adaptation. It is predicted that changes of gene expression by …

Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors

DWK Ng, C Zhang, M Miller, Z Shen, SP Briggs… - Heredity, 2012 - nature.com
Autopolyploidy and allopolyploidy are common in many plants and some animals. Rapid
changes in genomic composition and gene expression have been observed in both …

Protein–protein and protein–DNA dosage balance and differential paralog transcription factor retention in polyploids

JA Birchler, RA Veitia - Frontiers in plant science, 2011 - frontiersin.org
Most eukaryotes have an evolutionary history of repeated polyploidization followed by
fractionation (or diploidization; Makino and McLysaght, 2010; Jiao et al., 2011). The …

Comparative proteomic study on Brassica hexaploid and its parents provides new insights into the effects of polyploidization

Y Shen, Y Zhang, J Zou, J Meng, J Wang - Journal of proteomics, 2015 - Elsevier
Polyploidy has played an important role in promoting plant evolution through genomic
merging and doubling. Although genomic and transcriptomic changes have been observed …

Genomic aspects of research involving polyploid plants

X Yang, CY Ye, ZM Cheng, TJ Tschaplinski… - Plant Cell, Tissue and …, 2011 - Springer
Almost all extant plant species have doubled their genomes at least once in their
evolutionary histories, resulting in polyploidy which provided a rich genomic resource for …

Proteomic patterns associated with heterosis

J Xing, Q Sun, Z Ni - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2016 - Elsevier
Heterosis is characterized by higher seed yields, plant biomass or other traits in
heterozygotes or hybrids compared with their genetically divergent parents, which are often …

Molecular tools for exploring polyploid genomes in plants

R Aversano, MR Ercolano, I Caruso, C Fasano… - International journal of …, 2012 - mdpi.com
Polyploidy is a very common phenomenon in the plant kingdom, where even diploid species
are often described as paleopolyploids. The polyploid condition may bring about several …

Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …