[HTML][HTML] Metataxonomic and metagenomic approaches vs. culture-based techniques for clinical pathology

SK Hilton, E Castro-Nallar, M Pérez-Losada… - Frontiers in …, 2016 - frontiersin.org
Diagnoses that are both timely and accurate are critically important for patients with life-
threatening or drug resistant infections. Technological improvements in High-Throughput …

[HTML][HTML] Rapid pathogen identification in bacterial pneumonia using real-time metagenomics

KM Pendleton, JR Erb-Downward, Y Bao… - American journal of …, 2017 - atsjournals.org
Discussion These cases, which represent the first use of real-time metagenomic sequencing
to identify pathogens in pneumonia, demonstrate the enormous potential of rapid …

[HTML][HTML] Clinical impact of metagenomic next-generation sequencing of bronchoalveolar lavage in the diagnosis and management of pneumonia: a multicenter …

H Zhou, PMK Larkin, D Zhao, Q Ma, Y Yao, X Wu… - The Journal of Molecular …, 2021 - Elsevier
Rapid and accurate pathogen identification is necessary for appropriate treatment of
pneumonia. Here, we describe the use of shotgun metagenomic next-generation …

[HTML][HTML] Improving pulmonary infection diagnosis with metagenomic next generation sequencing

YY Qian, HY Wang, Y Zhou, HC Zhang… - Frontiers in cellular …, 2021 - frontiersin.org
Pulmonary infections are among the most common and important infectious diseases due to
their high morbidity and mortality, especially in older and immunocompromised individuals …

[HTML][HTML] Metagenomic identification of severe pneumonia pathogens in mechanically-ventilated patients: a feasibility and clinical validity study

L Yang, G Haidar, H Zia, R Nettles, S Qin, X Wang… - Respiratory …, 2019 - Springer
Background Metagenomic sequencing of respiratory microbial communities for pathogen
identification in pneumonia may help overcome the limitations of culture-based methods. We …

[HTML][HTML] Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

N Couto, L Schuele, EC Raangs, MP Machado… - Scientific reports, 2018 - nature.com
High throughput sequencing has been proposed as a one-stop solution for diagnostics and
molecular typing directly from patient samples, allowing timely and appropriate …

Clinical application of metagenomic next‐generation sequencing technology in the diagnosis and treatment of pulmonary infection pathogens: A prospective single …

N Li, X Ma, J Zhou, J Deng, C Gu, C Fei… - Journal of clinical …, 2022 - Wiley Online Library
Introduction Rapid and accurate pathogen identification is essential for the treatment of
pneumonia. Metagenomic next‐generation sequencing (mNGS) is a newly developed …

[HTML][HTML] Prospective evaluation of a rapid clinical metagenomics test for bacterial pneumonia

S Mu, L Hu, Y Zhang, Y Liu, X Cui, X Zou… - Frontiers in cellular …, 2021 - frontiersin.org
Background The diagnosis of bacterial pathogens in lower respiratory tract infections (LRI)
using conventional culture methods remains challenging and time-consuming. Objectives …

Metagenomic sequencing as a pathogen-agnostic clinical diagnostic tool for infectious diseases: a systematic review and meta-analysis of diagnostic test accuracy …

KN Govender, TL Street, ND Sanderson… - Journal of clinical …, 2021 - Am Soc Microbiol
Metagenomic sequencing is frequently claimed to have the potential to revolutionize
microbiology through rapid species identification and antimicrobial resistance (AMR) …

[HTML][HTML] Respiratory microbiome profiling for etiologic diagnosis of pneumonia in mechanically ventilated patients

GD Kitsios, A Fitch, DV Manatakis, SF Rapport… - Frontiers in …, 2018 - frontiersin.org
Etiologic diagnosis of bacterial pneumonia relies on identification of causative pathogens by
cultures, which require extended incubation periods and have limited sensitivity. Next …