A robust aCGH data recovery framework based on half quadratic minimization
M Mohammadi, GA Hodtani - Computers in biology and medicine, 2016 - Elsevier
This paper presents a general half quadratic framework for simultaneous analysis of the
whole array comparative genomic hybridization (aCGH) profiles in a data set. The proposed …
whole array comparative genomic hybridization (aCGH) profiles in a data set. The proposed …
Robust smooth segmentation approach for array CGH data analysis
J Huang, A Gusnanto, K O'Sullivan, J Staaf… - …, 2007 - academic.oup.com
Motivation: Array comparative genomic hybridization (aCGH) provides a genome-wide
technique to screen for copy number alteration. The existing segmentation approaches for …
technique to screen for copy number alteration. The existing segmentation approaches for …
Classification of array CGH data using smoothed logistic regression model
J Huang, A Salim, K Lei, K O'Sullivan… - Statistics in …, 2009 - Wiley Online Library
Array comparative genomic hybridization (aCGH) provides a genome‐wide information of
DNA copy number that is potentially useful for disease classification. One immediate …
DNA copy number that is potentially useful for disease classification. One immediate …
[HTML][HTML] A robust correntropy-based method for analyzing multisample aCGH data
This paper presents a new method for analyzing array comparative genomic hybridization
(aCGH) data based on Correntropy. A new formulation based on low-rank aCGH data and …
(aCGH) data based on Correntropy. A new formulation based on low-rank aCGH data and …
Breakpoint identification and smoothing of array comparative genomic hybridization data
We describe a tool, called aCGH-Smooth, for the automated identification of breakpoints and
smoothing of microarray comparative genomic hybridization (array CGH) data. aCGH …
smoothing of microarray comparative genomic hybridization (array CGH) data. aCGH …
Optimization of probe coverage for high-resolution oligonucleotide aCGH
Motivation: The resolution at which genomic alterations can be mapped by means of
oligonucleotide aCGH (array-based comparative genomic hybridization) is limited by two …
oligonucleotide aCGH (array-based comparative genomic hybridization) is limited by two …
Integrating copy number polymorphisms into array CGH analysis using a robust HMM
SP Shah, X Xuan, RJ DeLeeuw, M Khojasteh… - …, 2006 - academic.oup.com
Motivation: Array comparative genomic hybridization (aCGH) is a pervasive technique used
to identify chromosomal aberrations in human diseases, including cancer. Aberrations are …
to identify chromosomal aberrations in human diseases, including cancer. Aberrations are …
Quantile smoothing of array CGH data
PHC Eilers, RX De Menezes - Bioinformatics, 2005 - academic.oup.com
Abstract Motivation: Plots of array Comparative Genomic Hybridization (CGH) data often
show special patterns: stretches of constant level (copy number) with sharp jumps between …
show special patterns: stretches of constant level (copy number) with sharp jumps between …
Mat-aCGH: a Matlab toolbox for simultaneous multisample aCGH data analysis and visualization
M Mohammadi, H Sharifi Noghabi - bioRxiv, 2015 - biorxiv.org
Mat-aCGH is an application toolbox for analysis and visualization of microarray-comparative
genomic hybridization (array-CGH or aCGH) data which is based on Matlab. Full process of …
genomic hybridization (array-CGH or aCGH) data which is based on Matlab. Full process of …
A very fast and accurate method for calling aberrations in array-CGH data
M Benelli, G Marseglia, G Nannetti, R Paravidino… - …, 2010 - academic.oup.com
Array comparative genomic hybridization (aCGH) is a microarray technology that allows one
to detect and map genomic alterations. The standard workflow of the aCGH data analysis …
to detect and map genomic alterations. The standard workflow of the aCGH data analysis …