Metagenomics, metatranscriptomics, and metabolomics approaches for microbiome analysis: supplementary issue: bioinformatics methods and applications for big …
V Aguiar-Pulido, W Huang… - Evolutionary …, 2016 - journals.sagepub.com
Microbiomes are ubiquitous and are found in the ocean, the soil, and in/on other living
organisms. Changes in the microbiome can impact the health of the environmental niche in …
organisms. Changes in the microbiome can impact the health of the environmental niche in …
Computational meta'omics for microbial community studies
Complex microbial communities are an integral part of the Earth's ecosystem and of our
bodies in health and disease. In the last two decades, culture‐independent approaches …
bodies in health and disease. In the last two decades, culture‐independent approaches …
Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes
Metagenomic and metatranscriptomic sequencing approaches are more frequently being
used to link microbiota to important diseases and ecological changes. Many analyses have …
used to link microbiota to important diseases and ecological changes. Many analyses have …
Advances and challenges in metatranscriptomic analysis
Sequencing-based analyses of microbiomes have traditionally focused on addressing the
question of community membership and profiling taxonomic abundance through amplicon …
question of community membership and profiling taxonomic abundance through amplicon …
Current opportunities and challenges in microbial metagenome analysis—a bioinformatic perspective
H Teeling, FO Glöckner - Briefings in bioinformatics, 2012 - academic.oup.com
Metagenomics has become an indispensable tool for studying the diversity and metabolic
potential of environmental microbes, whose bulk is as yet non-cultivable. Continual progress …
potential of environmental microbes, whose bulk is as yet non-cultivable. Continual progress …
Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality
Y Jiang, X Xiong, J Danska, J Parkinson - Microbiome, 2016 - Springer
Background Metatranscriptomics is emerging as a powerful technology for the functional
characterization of complex microbial communities (microbiomes). Use of unbiased RNA …
characterization of complex microbial communities (microbiomes). Use of unbiased RNA …
Towards biome-specific analysis of meta-omics data
Microbial ecology has witnessed tremendous progress over the last decade empowered by
metaomics approaches and innovations in DNA/RNA sequencing as well as high-resolution …
metaomics approaches and innovations in DNA/RNA sequencing as well as high-resolution …
gcMeta: a Global Catalogue of Metagenomics platform to support the archiving, standardization and analysis of microbiome data
W Shi, H Qi, Q Sun, G Fan, S Liu, J Wang… - Nucleic acids …, 2019 - academic.oup.com
Meta-omics approaches have been increasingly used to study the structure and function of
the microbial communities. A variety of large-scale collaborative projects are being …
the microbial communities. A variety of large-scale collaborative projects are being …
The use of metagenomic approaches to analyze changes in microbial communities
G Neelakanta, H Sultana - Microbiology insights, 2013 - journals.sagepub.com
Microbes are the most abundant biological entities found in the biosphere. Identification and
measurement of microorganisms (including viruses, bacteria, archaea, fungi, and protists) in …
measurement of microorganisms (including viruses, bacteria, archaea, fungi, and protists) in …
Toward accurate and quantitative comparative metagenomics
S Nayfach, KS Pollard - Cell, 2016 - cell.com
Shotgun metagenomics and computational analysis are used to compare the taxonomic and
functional profiles of microbial communities. Leveraging this approach to understand roles of …
functional profiles of microbial communities. Leveraging this approach to understand roles of …