Enrichment of viral nucleic acids by solution hybrid selection with genus specific oligonucleotides

AA Deviatkin, AN Lukashev, MM Markelov, LV Gmyl… - Scientific Reports, 2017 - nature.com
Despite recent advances, our knowledge of potential and rare human pathogens is far from
exhaustive. Current molecular diagnostic tools mainly rely on the specific amplification of …

Viral discovery and sequence recovery using DNA microarrays

D Wang, A Urisman, YT Liu, M Springer… - PLoS …, 2003 - journals.plos.org
Because of the constant threat posed by emerging infectious diseases and the limitations of
existing approaches used to identify new pathogens, there is a great demand for new …

An improved barcoded oligonucleotide primers-based next-generation sequencing approach for direct identification of viral pathogens in clinical specimens

CH Wang, NIE Kai, Y Zhang, W Ji, SF Zhou… - Biomedical and …, 2017 - Elsevier
Objective To provide a feasible and cost-effective next-generation sequencing (NGS)
method for accurate identification of viral pathogens in clinical specimens, because …

A general method to eliminate laboratory induced recombinants during massive, parallel sequencing of cDNA library

C Waugh, D Cromer, A Grimm, A Chopra, S Mallal… - Virology Journal, 2015 - Springer
Background Massive, parallel sequencing is a potent tool for dissecting the regulation of
biological processes by revealing the dynamics of the cellular RNA profile under different …

Comparing viral metagenomic extraction methods

J Klenner, C Kohl, PW Dabrowski… - Current Issues in Molecular …, 2017 - mdpi.com
A crucial step in the molecular detection of viruses in clinical specimens is the efficient
extraction of viral nucleic acids. The total yield of viral nucleic acid from a clinical specimen …

Discovery of RNA and DNA viruses using next-generation sequencing: Targeted enrichment

L Tong, K Smollett, K Kwok, K Nomikou, MJ Galarion… - 2023 - protocols.io
Next-generation sequencing is a powerful tool for viral genomics. Viruses often constitute a
very small proportion of any given sample meaning that methods that enable detection of …

Target-dependent enrichment of virions determines the reduction of high-throughput sequencing in virus discovery

RH Jensen, S Mollerup, T Mourier, TA Hansen… - PloS one, 2015 - journals.plos.org
Viral infections cause many different diseases stemming both from well-characterized viral
pathogens but also from emerging viruses, and the search for novel viruses continues to be …

PrimerHunter: a primer design tool for PCR-based virus subtype identification

J Duitama, DM Kumar, E Hemphill, M Khan… - Nucleic Acids …, 2009 - academic.oup.com
Rapid and reliable virus subtype identification is critical for accurate diagnosis of human
infections, effective response to epidemic outbreaks and global-scale surveillance of highly …

An approach for identification of unknown viruses using sequencing‐by‐hybridization

SE Katoski, H Meyer, S Ibrahim - Journal of Medical Virology, 2015 - Wiley Online Library
Accurate identification of biological threat agents, especially RNA viruses, in clinical or
environmental samples can be challenging because the concentration of viral genomic …

[HTML][HTML] Simultaneous rapid sequencing of multiple RNA virus genomes

JD Neill, DO Bayles, JF Ridpath - Journal of virological methods, 2014 - Elsevier
Comparing sequences of archived viruses collected over many years to the present allows
the study of viral evolution and contributes to the design of new vaccines. However, the …