Identification of protein complexes by using a spatial and temporal active protein interaction network
The rapid development of proteomics and high-throughput technologies has produced a
large amount of Protein-Protein Interaction (PPI) data, which makes it possible for …
large amount of Protein-Protein Interaction (PPI) data, which makes it possible for …
Mining temporal protein complex based on the dynamic pin weighted with connected affinity and gene co-expression
X Shen, L Yi, X Jiang, T He, X Hu, J Yang - PloS one, 2016 - journals.plos.org
The identification of temporal protein complexes would make great contribution to our
knowledge of the dynamic organization characteristics in protein interaction networks (PINs) …
knowledge of the dynamic organization characteristics in protein interaction networks (PINs) …
Construction and application of dynamic protein interaction network based on time course gene expression data
In recent years, researchers have tried to inject dynamic information into static protein
interaction networks (PIN s). The paper first proposes a three‐sigma method to identify …
interaction networks (PIN s). The paper first proposes a three‐sigma method to identify …
Detecting protein complexes from active protein interaction networks constructed with dynamic gene expression profiles
Abstract Background Protein interaction networks (PINs) are known to be useful to detect
protein complexes. However, most available PINs are static, which cannot reflect the …
protein complexes. However, most available PINs are static, which cannot reflect the …
Construction of dynamic probabilistic protein interaction networks for protein complex identification
Background Recently, high-throughput experimental techniques have generated a large
amount of protein-protein interaction (PPI) data which can construct large complex PPI …
amount of protein-protein interaction (PPI) data which can construct large complex PPI …
A Novel Core‐Attachment–Based Method to Identify Dynamic Protein Complexes Based on Gene Expression Profiles and PPI Networks
Cellular functions are always performed by protein complexes. At present, many approaches
have been proposed to identify protein complexes from protein–protein interaction (PPI) …
have been proposed to identify protein complexes from protein–protein interaction (PPI) …
Identifying dynamic protein complexes based on gene expression profiles and PPI networks
Identification of protein complexes from protein‐protein interaction networks has become a
key problem for understanding cellular life in postgenomic era. Many computational …
key problem for understanding cellular life in postgenomic era. Many computational …
Dynamic protein interaction network construction and applications
With more dynamic information available, researchers' attention has recently shifted from
static properties to dynamic properties of protein–protein interaction networks. To …
static properties to dynamic properties of protein–protein interaction networks. To …
A method for predicting protein complex in dynamic PPI networks
Background Accurate determination of protein complexes has become a key task of system
biology for revealing cellular organization and function. Up to now, the protein complex …
biology for revealing cellular organization and function. Up to now, the protein complex …
PCD-GED: Protein complex detection considering PPI dynamics based on time series gene expression data
A Lakizadeh, S Jalili, SA Marashi - Journal of theoretical biology, 2015 - Elsevier
Detection of protein complexes from protein–protein interaction (PPI) networks is essential to
understand the function of cell machinery. However, available PPIs are static, and cannot …
understand the function of cell machinery. However, available PPIs are static, and cannot …