Information dropout patterns in restriction site associated DNA phylogenomics and a comparison with multilocus Sanger data in a species-rich moth genus

KM Lee, SM Kivelä, V Ivanov, A Hausmann… - Systematic …, 2018 - academic.oup.com
A rapid shift from traditional Sanger sequencing-based molecular methods to the
phylogenomic approach with large numbers of loci is underway. Among phylogenomic …

RADseq data reveal ancient, but not pervasive, introgression between Californian tree and scrub oak species (Quercus sect. Quercus: Fagaceae)

BY Kim, X Wei, S Fitz‐Gibbon, KE Lohmueller… - Molecular …, 2018 - Wiley Online Library
A long‐term debate in evolutionary biology is the extent to which reproductive isolation is a
necessary element of speciation. Hybridizing plants in general are cited as evidence against …

High‐throughput sequencing data clarify evolutionary relationships among North American Vitis species and improve identification in USDA Vitis germplasm …

LL Klein, AJ Miller, C Ciotir, K Hyma… - American journal of …, 2018 - Wiley Online Library
Premise Of The Study Grapes are one of the most economically important berry crops
worldwide, with the vast majority of production derived from the domesticated Eurasian …

[HTML][HTML] Plant phylogenomics based on genome-partitioning strategies: Progress and prospects

X Yu, D Yang, C Guo, L Gao - Plant diversity, 2018 - Elsevier
The rapid expansion of next-generation sequencing (NGS) has generated a powerful array
of approaches to address fundamental questions in biology. Several genome-partitioning …

[HTML][HTML] A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates

LM Valencia, A Martins, EM Ortiz, A Di Fiore - PloS one, 2018 - journals.plos.org
Until recently, most phylogenetic and population genetics studies of nonhuman primates
have relied on mitochondrial DNA and/or a small number of nuclear DNA markers, which …

Phylogenomics resolves evolutionary relationships and provides insights into floral evolution in the tribe Shoreeae (Dipterocarpaceae)

J Heckenhauer, R Samuel, PS Ashton, KA Salim… - Molecular Phylogenetics …, 2018 - Elsevier
A supra-annual, community-level synchronous flowering prevails in several parts of the
tropical forests of Southeast Asia and its evolution has been hypothesized to be linked to …

Integrating genomic and phenotypic data to evaluate alternative phylogenetic and species delimitation hypotheses in a recent evolutionary radiation of grasshoppers

V Noguerales, PJ Cordero, J Ortego - Molecular Ecology, 2018 - Wiley Online Library
Although resolving phylogenetic relationships and establishing species limits are primary
goals of systematics, these tasks remain challenging at both conceptual and analytical …

[HTML][HTML] A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences

HT Binh, N Van Ngoc, S Tagane, H Toyama, K Mase… - PhytoKeys, 2018 - ncbi.nlm.nih.gov
The taxonomy of Quercus langbianensis and its relatives in Vietnam and Cambodia have
been revised based on evidence obtained from field observations, morphological …

[HTML][HTML] The application and limitation of universal chloroplast markers in discriminating east Asian evergreen oaks

M Yan, Y Xiong, R Liu, M Deng, J Song - Frontiers in plant science, 2018 - frontiersin.org
The East Asian subtropics mostly occupied by evergreen broad-leaved forests (EBLFs), is
one of the global diversity centers for evergreen oaks. Evergreen oaks are keystone canopy …

Molecular genetic approaches toward understanding forest-associated fungi and their interactive roles within forest ecosystems

JE Stewart, MS Kim, NB Klopfenstein - Current forestry reports, 2018 - Springer
Abstract Purpose of Review The continued, rapid development of novel molecular genetic
tools is contributing to a better understanding of forest-associated fungi and their interactive …