[HTML][HTML] Comprehensive analysis of alternative splicing across tumors from 8,705 patients

A Kahles, KV Lehmann, NC Toussaint, M Hüser… - Cancer cell, 2018 - cell.com
Our comprehensive analysis of alternative splicing across 32 The Cancer Genome Atlas
cancer types from 8,705 patients detects alternative splicing events and tumor variants by …

OncoSplicing: an updated database for clinically relevant alternative splicing in 33 human cancers

Y Zhang, X Yao, H Zhou, X Wu, J Tian… - Nucleic Acids …, 2022 - academic.oup.com
Alternative splicing (AS) represents a crucial method in mRNA level to regulate gene
expression and contributes to the protein complexity. Abnormal splicing has been reported …

The functional impact of alternative splicing in cancer

H Climente-González, E Porta-Pardo, A Godzik… - Cell reports, 2017 - cell.com
Alternative splicing changes are frequently observed in cancer and are starting to be
recognized as important signatures for tumor progression and therapy. However, their …

Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis

K Thorsen, KD Sørensen, AS Brems-Eskildsen… - Molecular & Cellular …, 2008 - ASBMB
Alternative splicing enhances proteome diversity and modulates cancer-associated proteins.
To identify tissue-and tumor-specific alternative splicing, we used the GeneChip Human …

Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer

E Sebestyén, M Zawisza, E Eyras - Nucleic acids research, 2015 - academic.oup.com
The determination of the alternative splicing isoforms expressed in cancer is fundamental for
the development of tumor-specific molecular targets for prognosis and therapy, but it is …

Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer

Z Wang, HS Lo, H Yang, S Gere, Y Hu, KH Buetow… - Cancer research, 2003 - AACR
A genome-wide computational screen was performed to identify tumor-associated
alternative RNA splicing isoforms. A BLAST algorithm was used to compare 11,014 genes …

Alternative splicing in cancer: noise, functional, or systematic?

RI Skotheim, M Nees - The international journal of biochemistry & cell …, 2007 - Elsevier
Pre-messenger RNA splicing is a fine-tuned process that generates multiple functional
variants from individual genes. Various cell types and developmental stages regulate …

Widespread intron retention diversifies most cancer transcriptomes

H Dvinge, RK Bradley - Genome medicine, 2015 - Springer
Background Somatic mutations affecting components of the RNA splicing machinery occur
with high frequencies across many tumor types. These mutations give rise to distinct …

CancerSplicingQTL: a database for genome-wide identification of splicing QTLs in human cancer

J Tian, Z Wang, S Mei, N Yang, Y Yang… - Nucleic acids …, 2019 - academic.oup.com
Alternative splicing (AS) is a widespread process that increases structural transcript variation
and proteome diversity. Aberrant splicing patterns are frequently observed in cancer …

TSVdb: a web-tool for TCGA splicing variants analysis

W Sun, T Duan, P Ye, K Chen, G Zhang, M Lai… - BMC genomics, 2018 - Springer
Background Collaborative projects such as The Cancer Genome Atlas (TCGA) have
generated various-omics and clinical data on cancer. Many computational tools have been …