RADseq approaches and applications for forest tree genetics
As tree species vary extensively in genome size, complexity, and resource development,
reduced representation methods have been increasingly employed for the generation of …
reduced representation methods have been increasingly employed for the generation of …
High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra
A Konar, O Choudhury, R Bullis, L Fiedler, JM Kruser… - BMC genomics, 2017 - Springer
Background Restriction site associated DNA sequencing (RADseq) has the potential to be a
broadly applicable, low-cost approach for high-quality genetic linkage mapping in forest …
broadly applicable, low-cost approach for high-quality genetic linkage mapping in forest …
Genomic exploration and molecular marker development in a large and complex conifer genome using RADseq and mRNAseq
We combined restriction site associated DNA sequencing (RADseq) using a
hypomethylation‐sensitive enzyme and messenger RNA sequencing (mRNA seq) to …
hypomethylation‐sensitive enzyme and messenger RNA sequencing (mRNA seq) to …
Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics
NC Rochette, AG Rivera‐Colón… - Molecular ecology, 2019 - Wiley Online Library
For half a century population genetics studies have put type II restriction endonucleases to
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …
Deriving genotypes from RAD-seq short-read data using Stacks
NC Rochette, JM Catchen - Nature protocols, 2017 - nature.com
Restriction site-associated DNA sequencing (RAD-seq) allows for the genome-wide
discovery and genotyping of single-nucleotide polymorphisms in hundreds of individuals at …
discovery and genotyping of single-nucleotide polymorphisms in hundreds of individuals at …
RNA-seq analysis in forest tree species: bioinformatic problems and solutions
U Lopez de Heredia, JL Vázquez-Poletti - Tree Genetics & Genomes, 2016 - Springer
Direct sequencing of RNA (RNA-seq) using next-generation sequencing platforms has
allowed a growing number of gene expression studies focused on forest trees in the last 5 …
allowed a growing number of gene expression studies focused on forest trees in the last 5 …
Harnessing the power of RADseq for ecological and evolutionary genomics
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …
Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference
Restriction site‐associated DNA sequencing (RAD‐seq) provides high‐resolution
population genomic data at low cost, and has become an important component in ecological …
population genomic data at low cost, and has become an important component in ecological …
Selecting RAD-Seq data analysis parameters for population genetics: the more the better?
N Díaz-Arce, N Rodríguez-Ezpeleta - Frontiers in genetics, 2019 - frontiersin.org
Restriction site-associated DNA sequencing (RAD-seq) has become a powerful and widely
used tool in molecular ecology studies as it allows to cost-effectively recover thousands of …
used tool in molecular ecology studies as it allows to cost-effectively recover thousands of …
RADSeq: next-generation population genetics
JW Davey, ML Blaxter - Briefings in functional genomics, 2010 - academic.oup.com
Next-generation sequencing technologies are making a substantial impact on many areas of
biology, including the analysis of genetic diversity in populations. However, genome-scale …
biology, including the analysis of genetic diversity in populations. However, genome-scale …