Resolving rapid radiations within angiosperm families using anchored phylogenomics

É Léveillé-Bourret, JR Starr, BA Ford… - Systematic …, 2018 - academic.oup.com
Despite the promise that molecular data would provide a seemingly unlimited source of
independent characters, many plant phylogenetic studies are still based on only two …

Anchored phylogenomics of angiosperms I: assessing the robustness of phylogenetic estimates

C Buddenhagen, AR Lemmon, EM Lemmon, J Bruhl… - BioRxiv, 2016 - biorxiv.org
An important goal of the angiosperm systematics community has been to develop a shared
approach to molecular data collection, such that phylogenomic data sets from different focal …

Nuclear phylogenomics of angiosperms and insights into their relationships and evolution

G Zhang, H Ma - Journal of Integrative Plant Biology, 2024 - Wiley Online Library
Angiosperms (flowering plants) are by far the most diverse land plant group with over
300,000 species. The sudden appearance of diverse angiosperms in the fossil record was …

Resolving recent plant radiations: power and robustness of genotyping-by-sequencing

M Fernández-Mazuecos, G Mellers… - Systematic …, 2018 - academic.oup.com
Disentangling species boundaries and phylogenetic relationships within recent evolutionary
radiations is a challenge due to the poor morphological differentiation and low genetic …

Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study

JC Bagley, S Uribe-Convers, MM Carlsen… - Molecular phylogenetics …, 2020 - Elsevier
Targeted sequence capture is a promising approach for large-scale phylogenomics.
However, rapid evolutionary radiations pose significant challenges for phylogenetic …

The perfect storm: gene tree estimation error, incomplete lineage sorting, and ancient gene flow explain the most recalcitrant ancient angiosperm clade, Malpighiales

L Cai, Z Xi, EM Lemmon, AR Lemmon, A Mast… - Systematic …, 2021 - academic.oup.com
The genomic revolution offers renewed hope of resolving rapid radiations in the Tree of Life.
The development of the multispecies coalescent model and improved gene tree estimation …

Genome‐scale angiosperm phylogenies based on nuclear, plastome, and mitochondrial datasets

H Hu, P Sun, Y Yang, J Ma, J Liu - Journal of Integrative Plant …, 2023 - Wiley Online Library
Angiosperms dominate the Earth's ecosystems and provide most of the basic necessities for
human life. The major angiosperm clades comprise 64 orders, as recognized by the APG IV …

Resolving interspecific relationships within evolutionarily young lineages using RNA-seq data: an example from Pedicularis section Cyathophora (Orobanchaceae)

HJ Wang, WT Li, YN Liu, FS Yang, XQ Wang - Molecular Phylogenetics and …, 2017 - Elsevier
Phylogenomics has shown great potential in resolving evolutionary relationships at different
taxonomical levels. However, it remains controversial whether all orthologous genes under …

Tackling rapid radiations with targeted sequencing

I Larridon, T Villaverde, AR Zuntini, L Pokorny… - Frontiers in plant …, 2020 - frontiersin.org
In phylogenetic studies across angiosperms, at various taxonomic levels, polytomies have
persisted despite efforts to resolve them by increasing sampling of taxa and loci. The large …

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

Z Xi, BR Ruhfel, H Schaefer… - Proceedings of the …, 2012 - National Acad Sciences
The angiosperm order Malpighiales includes∼ 16,000 species and constitutes up to 40% of
the understory tree diversity in tropical rain forests. Despite remarkable progress in …