octoFLU: automated classification for the evolutionary origin of influenza A virus gene sequences detected in US Swine
The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from
nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and …
nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and …
The genomic evolution of H1 influenza A viruses from swine detected in the United States between 2009 and 2016
S Gao, TK Anderson, RR Walia… - Journal of General …, 2017 - microbiologyresearch.org
Transmission of influenza A virus (IAV) from humans to swine occurs with relative frequency
and is a critical contributor to swine IAV diversity. Subsequent to the introduction of these …
and is a critical contributor to swine IAV diversity. Subsequent to the introduction of these …
Complete genome sequencing of influenza A viruses within swine farrow-to-wean farms reveals the emergence, persistence, and subsidence of diverse viral …
A Diaz, D Marthaler, M Culhane, S Sreevatsan… - Journal of …, 2017 - Am Soc Microbiol
Influenza A viruses (IAVs) are endemic in swine and represent a public health risk. However,
there is limited information on the genetic diversity of swine IAVs within farrow-to-wean …
there is limited information on the genetic diversity of swine IAVs within farrow-to-wean …
Review of genome sequencing technologies in molecular characterization of influenza A viruses in swine
RP Chauhan, ML Gordon - Journal of Veterinary Diagnostic …, 2022 - journals.sagepub.com
The rapidly evolving antigenic diversity of influenza A virus (IAV) genomes in swine makes it
imperative to detect emerging novel strains and track their circulation. We analyzed in our …
imperative to detect emerging novel strains and track their circulation. We analyzed in our …
ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of Influenza A virus in swine
MA Zeller, TK Anderson, RW Walia, AL Vincent… - BMC …, 2018 - Springer
Abstract Background Influenza A Virus (IAV) causes respiratory disease in swine and is a
zoonotic pathogen. Uncontrolled IAV in swine herds not only affects animal health, it also …
zoonotic pathogen. Uncontrolled IAV in swine herds not only affects animal health, it also …
Introductions and evolution of human-origin seasonal influenza a viruses in multinational swine populations
MI Nelson, DE Wentworth, MR Culhane… - Journal of …, 2014 - Am Soc Microbiol
The capacity of influenza A viruses to cross species barriers presents a continual threat to
human and animal health. Knowledge of the human-swine interface is particularly important …
human and animal health. Knowledge of the human-swine interface is particularly important …
Method comparison of targeted influenza A virus typing and whole-genome sequencing from respiratory specimens of companion animals
PK Mitchell, BD Cronk, IEH Voorhees… - Journal of …, 2021 - journals.sagepub.com
Epidemics of H3N8 and H3N2 influenza A viruses (IAVs) in dogs, along with recognition of
spillover infections from IAV strains typically found in humans or other animals, have …
spillover infections from IAV strains typically found in humans or other animals, have …
Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain
Defining factors that influence spatial and temporal patterns of influenza A virus (IAV) is
essential to inform vaccine strain selection and strategies to reduce the spread of potentially …
essential to inform vaccine strain selection and strategies to reduce the spread of potentially …
Regional patterns of genetic diversity in swine influenza A viruses in the United States from 2010 to 2016
RR Walia, TK Anderson… - Influenza and other …, 2019 - Wiley Online Library
Background Regular spatial and temporal analyses of the genetic diversity and evolutionary
patterns of influenza A virus (IAV) in swine inform control efforts and improve animal health …
patterns of influenza A virus (IAV) in swine inform control efforts and improve animal health …
Genome plasticity of triple-reassortant H1N1 influenza A virus during infection of vaccinated pigs
A Diaz, S Enomoto, A Romagosa… - Journal of General …, 2015 - microbiologyresearch.org
To gain insight into the evolution of influenza A viruses (IAVs) during infection of vaccinated
pigs, we experimentally infected a 3-week-old naive pig with a triple-reassortant H1N1 IAV …
pigs, we experimentally infected a 3-week-old naive pig with a triple-reassortant H1N1 IAV …