[HTML][HTML] Identification and assessment of variable single-copy orthologous (SCO) nuclear loci for low-level phylogenomics: a case study in the genus Rosa …
K Debray, J Marie-Magdelaine, T Ruttink… - BMC Evolutionary …, 2019 - Springer
Background With an ever-growing number of published genomes, many low levels of the
Tree of Life now contain several species with enough molecular data to perform shallow …
Tree of Life now contain several species with enough molecular data to perform shallow …
Comparative plastid genome analyses of Rosa: Insights into the phylogeny and gene divergence
C Zhang, SQ Li, HH Xie, JQ Liu, XF Gao - Tree Genetics & Genomes, 2022 - Springer
The genus Rosa comprises more than 150 species spread across three subgenera,
Hesperhodos, Hulthemia, and Rosa, most of which have high economic and ecological …
Hesperhodos, Hulthemia, and Rosa, most of which have high economic and ecological …
[HTML][HTML] Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers
Background Detailed comparative genome analyses within the economically important
Rosaceae family have not been conducted. This is largely due to the lack of conserved gene …
Rosaceae family have not been conducted. This is largely due to the lack of conserved gene …
Unveiling the Patterns of Reticulated Evolutionary Processes with Phylogenomics: Hybridization and Polyploidy in the Genus Rosa
K Debray, MC Le Paslier, A Bérard… - Systematic …, 2022 - academic.oup.com
Reticulation, caused by hybridization and allopolyploidization, is considered an important
and frequent phenomenon in the evolution of numerous plant lineages. Although both …
and frequent phenomenon in the evolution of numerous plant lineages. Although both …
Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids
PR Steele, M Guisinger-Bellian, CR Linder… - Molecular Phylogenetics …, 2008 - Elsevier
Angiosperm systematics has progressed to the point where it is now expected that multiple,
independent markers be used in phylogenetic studies. Universal primers for amplifying …
independent markers be used in phylogenetic studies. Universal primers for amplifying …
Phylogenomic analyses of large-scale nuclear genes provide new insights into the evolutionary relationships within the rosids
The Rosids is one of the largest groups of flowering plants, with 140 families and∼ 70,000
species. Previous phylogenetic studies of the rosids have primarily utilized organelle genes …
species. Previous phylogenetic studies of the rosids have primarily utilized organelle genes …
[HTML][HTML] Rosaceae phylogenomic studies provide insights into the evolution of new genes
L Jiang, X Li, K Lyu, H Wang, Z Li, W Qi, L Zhang… - Horticultural Plant …, 2024 - Elsevier
Rosa banksiae, known as Lady Banks' rose, is a perennial ornamental crop and a versatile
herb in traditional Chinese medicine. Given the lack of genomic resources, we assembled a …
herb in traditional Chinese medicine. Given the lack of genomic resources, we assembled a …
[HTML][HTML] Genome assembly and phylogenomic data analyses using plastid data: Contrasting species tree estimation methods
Phylogenomics has become increasingly popular in recent years mostly due to the
increased affordability of next generation sequencing techniques. Phylogenomics has …
increased affordability of next generation sequencing techniques. Phylogenomics has …
[HTML][HTML] Identifying genetic markers for a range of phylogenetic utility–From species to family level
B Choi, MD Crisp, LG Cook, K Meusemann… - PLoS …, 2019 - journals.plos.org
Resolving the phylogenetic relationships of closely related species using a small set of loci
is challenging as sufficient information may not be captured from a limited sample of the …
is challenging as sufficient information may not be captured from a limited sample of the …
[HTML][HTML] The development of a high-density genetic map significantly improves the quality of reference genome assemblies for rose
S Li, G Yang, S Yang, J Just, H Yan, N Zhou, H Jian… - Scientific reports, 2019 - nature.com
Roses are important woody plants featuring a set of important traits that cannot be
investigated in traditional model plants. Here, we used the restriction-site associated DNA …
investigated in traditional model plants. Here, we used the restriction-site associated DNA …