Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

Evolutionary dynamics of duplicated genes in plants

A Lawton-Rauh - Molecular phylogenetics and evolution, 2003 - Elsevier
Gene duplication, arising from region-specific duplication or genome-wide polyploidization,
is a prominent feature in plant genome evolution. Understanding the mechanisms …

Widespread whole genome duplications contribute to genome complexity and species diversity in angiosperms

R Ren, H Wang, C Guo, N Zhang, L Zeng, Y Chen… - Molecular plant, 2018 - cell.com
Gene duplications provide evolutionary potentials for generating novel functions, while
polyploidization or whole genome duplication (WGD) doubles the chromosomes initially and …

Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

Polyploidy and genome evolution in plants

PS Soltis, DB Marchant, Y Van de Peer… - Current opinion in …, 2015 - Elsevier
Plant genomes vary in size and complexity, fueled in part by processes of whole-genome
duplication (WGD; polyploidy) and subsequent genome evolution. Despite repeated …

Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants

W Jiang, Y Liu, E Xia, L Gao - Plant physiology, 2013 - academic.oup.com
The evolution of genes and genomes after polyploidization has been the subject of
extensive studies in evolutionary biology and plant sciences. While a significant number of …

The evolution of gene duplicates in angiosperms and the impact of protein–protein interactions and the mechanism of duplication

J Defoort, Y Van de Peer… - Genome biology and …, 2019 - academic.oup.com
Gene duplicates, generated through either whole genome duplication (WGD) or small-scale
duplication (SSD), are prominent in angiosperms and are believed to play an important role …

PGDD: a database of gene and genome duplication in plants

TH Lee, H Tang, X Wang, AH Paterson - Nucleic acids research, 2012 - academic.oup.com
Genome duplication (GD) has permanently shaped the architecture and function of many
higher eukaryotic genomes. The angiosperms (flowering plants) are outstanding models in …

Polyploidy and genome evolution in plants

KL Adams, JF Wendel - Current opinion in plant biology, 2005 - Elsevier
Genome doubling (polyploidy) has been and continues to be a pervasive force in plant
evolution. Modern plant genomes harbor evidence of multiple rounds of past …

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

E Rodgers-Melnick, SP Mane… - Genome …, 2012 - genome.cshlp.org
Comparative analysis of multiple angiosperm genomes has implicated gene duplication in
the expansion and diversification of many gene families. However, empirical data and theory …