An evolutionary framework for measuring epigenomic information and estimating cell-type-specific fitness consequences
Here we ask the question “How much information do epigenomic datasets provide about
human genomic function?” We consider nine epigenomic features across 115 cell types and …
human genomic function?” We consider nine epigenomic features across 115 cell types and …
A method for calculating probabilities of fitness consequences for point mutations across the human genome
We describe a new computational method for estimating the probability that a point mutation
at each position in a genome will influence fitness. These'fitness consequence'(fitCons) …
at each position in a genome will influence fitness. These'fitness consequence'(fitCons) …
The missing diversity in human epigenomic studies
CE Breeze, S Beck, SI Berndt, N Franceschini - Nature genetics, 2022 - nature.com
The missing diversity in human epigenomic studies | Nature Genetics Skip to main content
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Thank you for visiting nature.com. You are using a browser version with limited support for …
Genome-wide inference of natural selection on human transcription factor binding sites
For decades, it has been hypothesized that gene regulation has had a central role in human
evolution, yet much remains unknown about the genome-wide impact of regulatory …
evolution, yet much remains unknown about the genome-wide impact of regulatory …
Estimation of allele-specific fitness effects across human protein-coding sequences and implications for disease
A central challenge in human genomics is to understand the cellular, evolutionary, and
clinical significance of genetic variants. Here, we introduce a unified population-genetic and …
clinical significance of genetic variants. Here, we introduce a unified population-genetic and …
Mutational load and the functional fraction of the human genome
B Galeota-Sprung, P Sniegowski… - Genome biology and …, 2020 - academic.oup.com
The fraction of the human genome that is functional is a question of both evolutionary and
practical importance. Studies of sequence divergence have suggested that the functional …
practical importance. Studies of sequence divergence have suggested that the functional …
Potential energy landscapes identify the information-theoretic nature of the epigenome
G Jenkinson, E Pujadas, J Goutsias, AP Feinberg - Nature genetics, 2017 - nature.com
Epigenetics is the study of biochemical modifications carrying information independent of
DNA sequence, which are heritable through cell division. In 1940, Waddington coined the …
DNA sequence, which are heritable through cell division. In 1940, Waddington coined the …
The sequences of 150,119 genomes in the UK Biobank
BV Halldorsson, HP Eggertsson, KHS Moore… - Nature, 2022 - nature.com
Detailed knowledge of how diversity in the sequence of the human genome affects
phenotypic diversity depends on a comprehensive and reliable characterization of both …
phenotypic diversity depends on a comprehensive and reliable characterization of both …
Genome-wide signals of positive selection in human evolution
The role of positive selection in human evolution remains controversial. On the one hand,
scans for positive selection have identified hundreds of candidate loci, and the genome …
scans for positive selection have identified hundreds of candidate loci, and the genome …
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
Here, we demonstrate how comparative sequence analysis facilitates genome-wide base-
pair-level interpretation of individual genetic variation and address two questions of …
pair-level interpretation of individual genetic variation and address two questions of …