Transcriptome and regulatory maps of decidua-derived stromal cells inform gene discovery in preterm birth

NJ Sakabe, I Aneas, N Knoblauch, DR Sobreira… - Science …, 2020 - science.org
While a genetic component of preterm birth (PTB) has long been recognized and recently
mapped by genome-wide association studies (GWASs), the molecular determinants …

Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm

LF Chu, N Leng, J Zhang, Z Hou, D Mamott… - Genome biology, 2016 - Springer
Background Human pluripotent stem cells offer the best available model to study the
underlying cellular and molecular mechanisms of human embryonic lineage specification …

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

L Yan, M Yang, H Guo, L Yang, J Wu, R Li… - Nature structural & …, 2013 - nature.com
Measuring gene expression in individual cells is crucial for understanding the gene
regulatory network controlling human embryonic development. Here we apply single-cell …

Gene expression signatures defining fundamental biological processes in pluripotent, early, and late differentiated embryonic stem cells

JA Gaspar, MX Doss, J Winkler, V Wagh… - Stem cells and …, 2012 - liebertpub.com
Investigating the molecular mechanisms controlling the in vivo developmental program
postembryogenesis is challenging and time consuming. However, the developmental …

ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells

H Xu, C Baroukh, R Dannenfelser, EY Chen… - Database, 2013 - academic.oup.com
High content studies that profile mouse and human embryonic stem cells (m/hESCs) using
various genome-wide technologies such as transcriptomics and proteomics are constantly …

[HTML][HTML] Cross-species transcriptional profiles establish a functional portrait of embryonic stem cells

Y Sun, H Li, Y Liu, S Shin, MP Mattson, MS Rao… - Genomics, 2007 - Elsevier
An understanding of the regulatory mechanisms responsible for pluripotency in embryonic
stem cells (ESCs) is critical for realizing their potential in medicine and science. Significant …

Gene expression profiling of embryo-derived stem cells reveals candidate genes associated with pluripotency and lineage specificity

TS Tanaka, T Kunath, WL Kimber, SA Jaradat… - Genome …, 2002 - genome.cshlp.org
Large-scale gene expression profiling was performed on embryo-derived stem cell lines to
identify molecular signatures of pluripotency and lineage specificity. Analysis of pluripotent …

[PDF][PDF] Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast

GG Stirparo, T Boroviak, G Guo, J Nichols… - …, 2018 - journals.biologists.com
Single-cell profiling techniques create opportunities to delineate cell fate progression in
mammalian development. Recent studies have provided transcriptome data from human pre …

Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal–foetal interface during pregnancy

AC Nelson, AW Mould, EK Bikoff… - Nature communications, 2016 - nature.com
Growth and survival of the mammalian embryo within the uterine environment depends on
the placenta, a highly complex vascularized organ comprised of both maternal and foetal …

Mapping gene circuits essential for germ layer differentiation via loss-of-function screens in haploid human embryonic stem cells

A Yilmaz, C Braverman-Gross, A Bialer-Tsypin… - Cell Stem Cell, 2020 - cell.com
Pluripotent stem cells can differentiate into all embryonic germ layers, yet the genes
essential for these cell fate transitions in human remain elusive. Here, we mapped the …