[HTML][HTML] Comparison of nucleic acid extraction methods for a viral metagenomics analysis of respiratory viruses
M Sabatier, A Bal, G Destras, H Regue, G Quéromès… - Microorganisms, 2020 - mdpi.com
Viral metagenomics next-generation sequencing (mNGS) is increasingly being used to
characterize the human virome. The impact of viral nucleic extraction on virome profiling has …
characterize the human virome. The impact of viral nucleic extraction on virome profiling has …
[HTML][HTML] Metagenomic analysis of viral nucleic acid extraction methods in respiratory clinical samples
D Zhang, X Lou, H Yan, J Pan, H Mao, H Tang, Y Shu… - BMC genomics, 2018 - Springer
Background Numerous protocols for viral enrichment and genome amplification have been
created. However, the direct identification of viral genomes from clinical specimens using …
created. However, the direct identification of viral genomes from clinical specimens using …
[HTML][HTML] Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries
M Asplund, KR Kjartansdóttir, S Mollerup… - Clinical Microbiology …, 2019 - Elsevier
Objectives Sample preparation for high-throughput sequencing (HTS) includes treatment
with various laboratory components, potentially carrying viral nucleic acids, the extent of …
with various laboratory components, potentially carrying viral nucleic acids, the extent of …
Elimination of foreign sequences in eukaryotic viral reference genomes improves the accuracy of virome analysis
J Chen, Y Sun, X Yan, Z Ren, G Wang, Y Liu, Z Zhao… - Msystems, 2022 - Am Soc Microbiol
Widespread in public databases, foreign contaminant sequences pose a substantial
obstacle in genomic analyses. Such contamination in viral genome databases is also …
obstacle in genomic analyses. Such contamination in viral genome databases is also …
[HTML][HTML] An optimized metagenomic approach for virome detection of clinical pharyngeal samples with respiratory infection
B Liu, N Shao, J Wang, SY Zhou, HX Su… - Frontiers in …, 2020 - frontiersin.org
Respiratory virus infections are one of the major causes of acute respiratory disease or
exacerbation of chronic obstructive pulmonary disease (COPD). However, next-generation …
exacerbation of chronic obstructive pulmonary disease (COPD). However, next-generation …
[HTML][HTML] Evaluation of extraction and enrichment methods for recovery of respiratory RNA viruses in a metagenomics approach
Viral metagenomics is increasingly applied in viral detection and virome characterization.
Different extraction and enrichment techniques may be adopted, however, reports on their …
Different extraction and enrichment techniques may be adopted, however, reports on their …
[HTML][HTML] Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples
Background Next generation sequencing (NGS) technology allows laboratories to
investigate virome composition in clinical and environmental samples in a culture …
investigate virome composition in clinical and environmental samples in a culture …
Virome capture sequencing enables sensitive viral diagnosis and comprehensive virome analysis
Insensitivity and technical complexity have impeded the implementation of high-throughput
nucleic acid sequencing in differential diagnosis of viral infections in clinical laboratories …
nucleic acid sequencing in differential diagnosis of viral infections in clinical laboratories …
Unbiased detection of respiratory viruses by use of RNA sequencing-based metagenomics: a systematic comparison to a commercial PCR panel
EH Graf, KE Simmon, KD Tardif, W Hymas… - Journal of clinical …, 2016 - Am Soc Microbiol
Current infectious disease molecular tests are largely pathogen specific, requiring test
selection based on the patient's symptoms. For many syndromes caused by a large number …
selection based on the patient's symptoms. For many syndromes caused by a large number …
[HTML][HTML] The human virome protein cluster database (HVPC): a human viral metagenomic database for diversity and function annotation
AHA Elbehery, J Feichtmayer, D Singh… - Frontiers in …, 2018 - frontiersin.org
Human virome, including those of bacteria (bacteriophages) have received an increasing
attention recently, owing to the rapid developments in human microbiome research and the …
attention recently, owing to the rapid developments in human microbiome research and the …