Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

X Cai, L Chang, T Zhang, H Chen, L Zhang, R Lin… - Genome biology, 2021 - Springer
Background Despite the prevalence and recurrence of polyploidization in the speciation of
flowering plants, its impacts on crop intraspecific genome diversification are largely …

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome …

JH Mun, SJ Kwon, TJ Yang, YJ Seol, M Jin, JA Kim… - Genome biology, 2009 - Springer
Background Brassica rapa is one of the most economically important vegetable crops
worldwide. Owing to its agronomic importance and phylogenetic position, B. rapa provides a …

Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa

F Cheng, J Wu, L Fang, S Sun, B Liu, K Lin… - PloS one, 2012 - journals.plos.org
Polyploidization, both ancient and recent, is frequent among plants. A “two-step theory" was
proposed to explain the meso-triplication of the Brassica “A" genome: Brassica rapa. By …

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale… - Genome biology, 2014 - Springer
Background Brassica oleracea is a valuable vegetable species that has contributed to
human health and nutrition for hundreds of years and comprises multiple distinct cultivar …

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

S Liu, Y Liu, X Yang, C Tong, D Edwards… - Nature …, 2014 - nature.com
Polyploidization has provided much genetic variation for plant adaptive evolution, but the
mechanisms by which the molecular evolution of polyploid genomes establishes genetic …

Surviving a Genome Collision: Genomic Signatures of Allopolyploidization in the Recent Crop Species Brassica napus

B Samans, B Chalhoub, RJ Snowdon - The plant genome, 2017 - Wiley Online Library
Polyploidization has played a major role in crop plant evolution, leading to advantageous
traits that have been selected by humans. Here, we describe restructuring patterns in the …

Beyond genomic variation - comparison and functional annotation of three Brassica rapagenomes: a turnip, a rapid cycling and a Chinese cabbage

K Lin, N Zhang, EI Severing, H Nijveen, F Cheng… - Bmc Genomics, 2014 - Springer
Background Brassica rapa is an economically important crop species. During its long
breeding history, a large number of morphotypes have been generated, including leafy …

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea

F Cheng, R Sun, X Hou, H Zheng, F Zhang, Y Zhang… - Nature …, 2016 - nature.com
Brassica species, including crops such as cabbage, turnip and oilseed, display enormous
phenotypic variation. Brassica genomes have all undergone a whole-genome triplication …

Genome structural evolution in Brassica crops

Z He, R Ji, L Havlickova, L Wang, Y Li, HT Lee, J Song… - Nature Plants, 2021 - nature.com
The cultivated Brassica species include numerous vegetable and oil crops of global
importance. Three genomes (designated A, B and C) share mesohexapolyploid ancestry …

Genome triplication drove the diversification of Brassica plants

F Cheng, J Wu, X Wang - Horticulture research, 2014 - academic.oup.com
The genus Brassica belongs to the plant family Brassicaceae, which includes many
important crop species that are used as oilseed, condiments, or vegetables throughout the …