Extraction of causal relations based on SBEL and BERT model

Y Shao, H Li, J Gu, L Qian, G Zhou - Database, 2021 - academic.oup.com
Extraction of causal relations between biomedical entities in the form of Biological
Expression Language (BEL) poses a new challenge to the community of biomedical text …

Combining relation extraction with function detection for BEL statement extraction

S Liu, W Cheng, L Qian, G Zhou - Database, 2019 - academic.oup.com
The BioCreative-V community proposed a challenging task of automatic extraction of causal
relation network in Biological Expression Language (BEL) from the biomedical literature …

[HTML][HTML] Joint learning-based causal relation extraction from biomedical literature

D Li, P Wu, Y Dong, J Gu, L Qian, G Zhou - Journal of Biomedical …, 2023 - Elsevier
Causal relation extraction of biomedical entities is one of the most complex tasks in
biomedical text mining, which involves two kinds of information: entity relations and entity …

[HTML][HTML] Causal relationship extraction from biomedical text using deep neural models: A comprehensive survey

A Akkasi, MF Moens - Journal of biomedical informatics, 2021 - Elsevier
The identification of causal relationships between events or entities within biomedical texts
is of great importance for creating scientific knowledge bases and is also a fundamental …

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)

J Fluck, S Madan, S Ansari, AT Kodamullil, R Karki… - Database, 2016 - academic.oup.com
Success in extracting biological relationships is mainly dependent on the complexity of the
task as well as the availability of high-quality training data. Here, we describe the new …

BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text

PT Lai, YY Lo, MS Huang, YC Hsiao, RTH Tsai - Database, 2016 - academic.oup.com
Biological expression language (BEL) is one of the most popular languages to represent the
causal and correlative relationships among biological events. Automatically extracting and …

Biomedical event causal relation extraction based on a knowledge-guided hierarchical graph network

B Zhang, L Li, D Song, Y Zhao - Soft Computing, 2023 - Springer
Abstract Biomedical Event Causal Relation Extraction (BECRE) is a challenging task in
biological information extraction and plays a crucial role to serve for knowledge base and …

[PDF][PDF] Track 4 overview: extraction of causal network information in biological expression language (BEL)

J Fluck, S Madan, TR Ellendorff, T Mevissen… - Proceedings of the fifth …, 2015 - zora.uzh.ch
Automatic extraction of biological network information is one of the most desired and most
complex tasks in biological text mining. The BioCreative track 4 provides training data and …

[PDF][PDF] MediCause: Causal Relation Modelling and Extraction from Medical Publications.

I Reklos, A Meroño-Peñuela - TEXT2KG/MK@ ESWC, 2022 - ceur-ws.org
Causal relations are one of the most important types of information that can be extracted
from medical publications. Therefore, the automated extraction of such relations from …

BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences

KE Ravikumar, M Rastegar-Mojarad, H Liu - Database, 2017 - academic.oup.com
Extracting meaningful relationships with semantic significance from biomedical literature is
often a challenging task. BioCreative V track4 challenge for the first time has organized a …