A resource for improved predictions of Trypanosoma and Leishmania protein three-dimensional structure
RJ Wheeler - PLoS One, 2021 - journals.plos.org
AlphaFold2 and RoseTTAfold represent a transformative advance for predicting protein
structure. They are able to make very high-quality predictions given a high-quality alignment …
structure. They are able to make very high-quality predictions given a high-quality alignment …
IntFOLD: an integrated web resource for high performance protein structure and function prediction
The IntFOLD server provides a unified resource for the automated prediction of: protein
tertiary structures with built-in estimates of model accuracy (EMA), protein structural domain …
tertiary structures with built-in estimates of model accuracy (EMA), protein structural domain …
Before and after AlphaFold2: An overview of protein structure prediction
LMF Bertoline, AN Lima, JE Krieger… - Frontiers in …, 2023 - frontiersin.org
Three-dimensional protein structure is directly correlated with its function and its
determination is critical to understanding biological processes and addressing human …
determination is critical to understanding biological processes and addressing human …
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
Abstract The AlphaFold Protein Structure Database (AlphaFold DB, https://alphafold. ebi. ac.
uk) is an openly accessible, extensive database of high-accuracy protein-structure …
uk) is an openly accessible, extensive database of high-accuracy protein-structure …
The trRosetta server for fast and accurate protein structure prediction
The trRosetta (transform-restrained Rosetta) server is a web-based platform for fast and
accurate protein structure prediction, powered by deep learning and Rosetta. With the input …
accurate protein structure prediction, powered by deep learning and Rosetta. With the input …
Critical assessment of methods of protein structure prediction: Progress and new directions in round XI
Modeling of protein structure from amino acid sequence now plays a major role in structural
biology. Here we report new developments and progress from the CASP11 community …
biology. Here we report new developments and progress from the CASP11 community …
Efficient and accurate prediction of protein structure using RoseTTAFold2
AlphaFold2 and RoseTTAFold predict protein structures with very high accuracy despite
substantial architecture differences. We sought to develop an improved method combining …
substantial architecture differences. We sought to develop an improved method combining …
Protein structure prediction using Rosetta in CASP12
S Ovchinnikov, H Park, DE Kim… - Proteins: Structure …, 2018 - Wiley Online Library
We describe several notable aspects of our structure predictions using Rosetta in CASP12
in the free modeling (FM) and refinement (TR) categories. First, we had previously …
in the free modeling (FM) and refinement (TR) categories. First, we had previously …
Protein structure prediction in the deep learning era
Significant advances have been achieved in protein structure prediction, especially with the
recent development of the AlphaFold2 and the RoseTTAFold systems. This article reviews …
recent development of the AlphaFold2 and the RoseTTAFold systems. This article reviews …
Recent progress of protein tertiary structure prediction
The prediction of three-dimensional (3D) protein structure from amino acid sequences has
stood as a significant challenge in computational and structural bioinformatics for decades …
stood as a significant challenge in computational and structural bioinformatics for decades …