[PDF][PDF] Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant Pathogen Verticillium dahliae

DE Torres, BPHJ Thomma… - Genome Biology and …, 2021 - academic.oup.com
Transposable elements (TEs) are a major source of genetic and regulatory variation in their
host genome and are consequently thought to play important roles in evolution. Many fungal …

Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen

L Faino, MF Seidl, X Shi-Kunne, M Pauper… - Genome …, 2016 - genome.cshlp.org
Genomic plasticity enables adaptation to changing environments, which is especially
relevant for pathogens that engage in “arms races” with their hosts. In many pathogens …

A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen

DE Cook, HM Kramer, DE Torres, MF Seidl… - Elife, 2020 - elifesciences.org
Genomes store information at scales beyond the linear nucleotide sequence, which impacts
genome function at the level of an individual, while influences on populations and long-term …

Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defenses

C Lorrain, A Feurtey, M Möller, J Haueisen… - G3, 2021 - academic.oup.com
Transposable elements (TEs) impact genome plasticity, architecture, and evolution in fungal
plant pathogens. The wide range of TE content observed in fungal genomes reflects diverse …

Intraspecific variation of transposable elements reveals differences in the evolutionary history of fungal phytopathogen pathotypes

AA Nakamoto, PM Joubert… - Genome Biology and …, 2023 - academic.oup.com
Transposable elements (TEs) contribute to intraspecific variation and play important roles in
the evolution of fungal genomes. However, our understanding of the processes that shape …

Transposable elements in phytopathogenic Verticillium spp.: insights into genome evolution and inter- and intra-specific diversification

SG Amyotte, X Tan, K Pennerman… - BMC genomics, 2012 - Springer
Abstract Background Verticillium dahliae (Vd) and Verticillium albo-atrum (Va) are
cosmopolitan soil fungi causing very disruptive vascular diseases on a wide range of crop …

Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

R de Jonge, MD Bolton, A Kombrink… - Genome …, 2013 - genome.cshlp.org
Sexual recombination drives genetic diversity in eukaryotic genomes and fosters adaptation
to novel environmental challenges. Although strictly asexual microorganisms are often …

Dynamic virulence‐related regions of the plant pathogenic fungus Verticillium dahliae display enhanced sequence conservation

JRL Depotter, X Shi‐Kunne, H Missonnier… - Molecular …, 2019 - Wiley Online Library
Plant pathogens continuously evolve to evade host immune responses. During host
colonization, many fungal pathogens secrete effectors to perturb such responses, but these …

Recent transposable element bursts are associated with the proximity to genes in a fungal plant pathogen

U Oggenfuss, D Croll - PLoS Pathogens, 2023 - journals.plos.org
The activity of transposable elements (TEs) contributes significantly to pathogen genome
evolution. TEs often destabilize genome integrity but may also confer adaptive variation in …

A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen

U Oggenfuss, T Badet, T Wicker, FE Hartmann… - Elife, 2021 - elifesciences.org
Genome evolution is driven by the activity of transposable elements (TEs). The spread of
TEs can have deleterious effects including the destabilization of genome integrity and …